fastlmm/bed-reader

when to_bed is called it can change the properties matrix values

Closed this issue · 1 comments

CarlKCarlK commented

If to_bed is called with a 4x3 property matrix of NAN, it will turn the 3rd input column in to 0. It should not be change the column.
Repro: PySnpTools test test_writes2

Steps:

  • Create a local test that shows the problem.
  • Fix the problem.
  • Show that PySnpTool is fixed, too.
CarlKCarlK commented

Bug was on PySnpTools side.