fastlmm/bed-reader

Issues

• Tests that use www.ebi.ac.uk files sometimes timeout

  #29 opened 10 days ago by CarlKCarlK
  0

• Add Rust Lint program Clippy to CI process

  #6 opened 10 days ago by CarlKCarlK
  0

• [Bug] in _open_bed.py: File handler not closed

  #28 opened 2 months ago by r1cheu
  1

• when to_bed is called it can change the properties matrix values

  #27 opened 5 months ago by CarlKCarlK
  1

• pip install bed-reader[samples,sparse] zsh: no matches found

  #23 opened 7 months ago by chenghongdeng
  1

• Add a way to see if the file is SNP-major (the usual) or IID-major

  #21 opened 7 months ago by CarlKCarlK
  1

• Stream genotypes to bed file

  #25 opened 7 months ago by FabianGrammes
  10

• Support the individual-major format version of PLINK Bed 1.9

  #26 opened 7 months ago by CarlKCarlK
  0

• Add ability to read from cloud storage

  #22 opened 9 months ago by hammer
  16

• Sparse Genotype

  #17 opened a year ago by quattro
  10

• Make BedReaderPlus enum smaller

  #15 opened a year ago by CarlKCarlK
  1

• Remove dependances on Pandas & Pooch

  #20 opened a year ago by CarlKCarlK
  1

• If possible, move "[build]" out of pyproject.toml

  #18 opened a year ago by CarlKCarlK
  2

• dependencies in pyproject.toml should be a dictionary not a list

  #19 opened a year ago by CarlKCarlK
  1

• Bed() and Pheno() etc don't like Windows Paths

  #14 opened a year ago by CarlKCarlK
  1

• Make bed-reader package smaller by excluding \bed_reader\tests\data\

  #5 opened a year ago by CarlKCarlK
  1

• Build macOS arm64 wheels

  #13 opened a year ago by tomwhite
  3

• Python 3.11 wheels

  #12 opened 2 years ago by tomwhite
  4

• ValueError: File 'example.fam' is not in the registry.

  #10 opened 2 years ago by bill-95
  3

• Python dependencies no longer install with latest Maturin release.

  #11 opened 2 years ago by bradday4
  3

• change np.str to str to avoid warning

  #4 opened 3 years ago by CarlKCarlK
  1

• unable to install with pip

  #3 opened 4 years ago by remomomo
  3

• Add support for Python 3.9

  #2 opened 4 years ago by tirkarthi
  3

• Required packages not in setup.py

  #1 opened 4 years ago by eric-czech
  2