Pinned Repositories
cartpipeline
Testing pipeline for CAR-T targets
dask
Parallel computing with task scheduling
firebrowse
Python 2/3 port of firebrowse pypi package for Broad institute TCA data
portfolio
sgkit
Statistical genetics toolkit
cytokit
Microscopy Image Cytometry Toolkit
t-cell-relation-extraction
Literature mining for T cell relations
gwas-analysis
GWAS data analysis experiments
platform-pipe
Open Targets evidence normalization and scoring pipeline
eric-czech's Repositories
eric-czech/ngly1-gpt
eric-czech/sgkit
Statistical genetics toolkit
eric-czech/sgkit-dev
eric-czech/dask
Parallel computing with task scheduling
eric-czech/cbgen-py
Python wrapper around bgen C library.
eric-czech/covid-tracking-api
COVID-19 Rest & GraphQL API for US data, using Cloudflare Workers
eric-czech/COVIDScenarioPipeline
Public shared code for doing scenario forecasting and creating reports for various governmental entities.
eric-czech/dask-cloudprovider
Cloud provider cluster managers for dask distributed
eric-czech/dask-ml
Scalable Machine Learning with Dask
eric-czech/FaST-LMM
Python version of Factored Spectrally Transformed Linear Mixed Models
eric-czech/funtime-forecast
Activity ideas for kids
eric-czech/glow
An open-source toolkit for large-scale genomic analysis
eric-czech/gnomad_qc
eric-czech/hail
Scalable genomic data analysis.
eric-czech/hail-experiments
Hail data extraction and API experiments
eric-czech/musc_genomics
Collective efforts between MUSC and Benefitfocus to collect and analyze cancer therapy efficacy based on genomic data for various cell lines
eric-czech/nlp-experiments
eric-czech/org-dei-stats
Employee directory crawling and analysis
eric-czech/personal-automation
eric-czech/PHESANT
PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
eric-czech/prefect
The Prefect workflow platform
eric-czech/public-data
Repository for miscellaneous public datasets
eric-czech/publication-citation-prediction
eric-czech/pwa-example
Test PWA app
eric-czech/PySnpTools
A Python library for reading and manipulating genetic data.
eric-czech/rechunker
Disk-to-disk chunk transformation for chunked arrays.
eric-czech/sgkit-bgen
BGEN IO implementations for sgkit
eric-czech/sgkit-plink
PLINK IO implementations for sgkit
eric-czech/wakipy
eric-czech/xarray
N-D labeled arrays and datasets in Python