Pinned Repositories
cartpipeline
Testing pipeline for CAR-T targets
dask
Parallel computing with task scheduling
firebrowse
Python 2/3 port of firebrowse pypi package for Broad institute TCA data
flowdec
Tensorflow Deconvolution for Microscopy
portfolio
sgkit
Statistical genetics toolkit
cytokit
Microscopy Image Cytometry Toolkit
t-cell-relation-extraction
Literature mining for T cell relations
platform-pipe
Open Targets evidence normalization and scoring pipeline
eric-czech's Repositories
eric-czech/portfolio
eric-czech/cartpipeline
Testing pipeline for CAR-T targets
eric-czech/firebrowse
Python 2/3 port of firebrowse pypi package for Broad institute TCA data
eric-czech/data-engineer-challenge
NBS Recruiting challenge given to prospective data engineers
eric-czech/mgds
MUSC Genomics Data Server
eric-czech/plotly-scala
Scala bindings for plotly.js
eric-czech/flowdec
Tensorflow Deconvolution for Microscopy
eric-czech/biokepi
Bioinformatics Ketrew Pipelines
eric-czech/bratreader
Python code for reading Brat Repositories. Supports saving and reading from XML files for easy acces to annotations.
eric-czech/CellProfiler
An open-source application for biological image analysis
eric-czech/coclobas
Configurable Cloudy Batch Scheduler
eric-czech/codex
Processing worfklows for CODEX cytometric imaging data
eric-czech/codex-java
Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation
eric-czech/cytometry-experiments
Shiny app for RGLab tools
eric-czech/data_pipeline
Code for the data processing pipeline
eric-czech/devtest
eric-czech/fcsparser
a python parser for reading fcs files supprorting fcs 2.0, 3.0, 3.1
eric-czech/imagej-ops
ImageJ Ops: "Write once, run anywhere" image processing
eric-czech/ketrew
Keep Track of Experimental Workflows
eric-czech/notes
Statistics/Computing Notebooks
eric-czech/ops-experiments
EXPERIMENTAL repository for exploring Ops approaches, algorithms, etc.
eric-czech/ot-ev
Working with Open Targets evidence data 🧐
eric-czech/projects
eric-czech/SciSpaCy
A full SpaCy pipeline and models for scientific/biomedical documents.
eric-czech/secotrec
Setup Coclobas/Ketrew Clusters
eric-czech/snorkel
A system for quickly generating training data with weak supervision
eric-czech/spark-json-schema
JSON schema parser for Apache Spark
eric-czech/superset
Superset is a data exploration platform designed to be visual, intuitive, and interactive
eric-czech/SVHNClassifier
A TensorFlow implementation of Multi-digit Number Recognition from Street View Imagery using Deep Convolutional Neural Networks (http://arxiv.org/pdf/1312.6082.pdf)
eric-czech/wmibi
Water Missions BI Research