Pinned Repositories
cytokit
Microscopy Image Cytometry Toolkit
flowdec
TensorFlow Deconvolution for Microscopy Data
grafana-spark-dashboards
Scripts for generating Grafana dashboards for monitoring Spark jobs
ketrew
Keep Track of Experimental Workflows
pageant
Parallel Genomic Analysis Toolkit
pileup.js
Interactive in-browser track viewer
ppx_deriving_cmdliner
Ppx_deriving plugin for generating command line interfaces from types (Cmdliner.Term.t)
prohlatype
Probabilistic HLA typing
spree
Live-updating Spark UI built with Meteor
survivalstan
Library of Stan Models for Survival Analysis
Hammer Lab's Repositories
hammerlab/pileup.js
Interactive in-browser track viewer
hammerlab/spree
Live-updating Spark UI built with Meteor
hammerlab/survivalstan
Library of Stan Models for Survival Analysis
hammerlab/cytokit
Microscopy Image Cytometry Toolkit
hammerlab/ppx_deriving_cmdliner
Ppx_deriving plugin for generating command line interfaces from types (Cmdliner.Term.t)
hammerlab/flowdec
TensorFlow Deconvolution for Microscopy Data
hammerlab/genspio
Generate Shell Phrases In OCaml
hammerlab/dask-distributed-on-kubernetes
Deploy dask-distributed on google container engine using kubernetes
hammerlab/prohlatype
Probabilistic HLA typing
hammerlab/biokepi
Bioinformatics Ketrew Pipelines
hammerlab/spark-tests
Utilities for writing tests that use Apache Spark.
hammerlab/t-cell-relation-extraction
Literature mining for T cell relations
hammerlab/magic-rdds
Miscellaneous functionality for manipulating Apache Spark RDDs.
hammerlab/spark-json-relay
SparkListener that converts SparkListenerEvents to JSON and forwards them to an external service via RPC.
hammerlab/spark-util
low-level helpers for Apache Spark libraries and tests
hammerlab/awesome-clonality
A curated list of awesome clonality and tumor heterogeneity resources
hammerlab/pageant
Parallel Genomic Analysis Toolkit
hammerlab/sbt-parent
SBT plugins for publishing to Maven Central, shading and managing dependencies, reporting to Coveralls from TravisCI, and more
hammerlab/slim
Node server that listens to Spark events, aggregates statistics, and writes them to Mongo
hammerlab/vcf-annotate-polyphen
A tool to annotate human VCF files with PolyPhen2 effect measures
hammerlab/math-utils
Math and statistics utilities
hammerlab/flusso
FCS (Flow Cytometry Standard) parser and utility
hammerlab/SmartCount
Repository for collaboration on Celldom computer vision solutions
hammerlab/stancache
Filecache for stan models
hammerlab/t-cell-electroporation
Code/Data repository for "Electroporation characteristics of human primary T cells"
hammerlab/flowrepository-metadata-db
hammerlab/sbt-parent.g8
giter8 template for the hammerlab/sbt-parent SBT plugin
hammerlab/spheroid
Training data, models, and analysis for 3D culture cytotoxicity assays with microscopy
hammerlab/t-cell-activation
Modeling bead based T cell activation to optimize ex vivo culturing conditions
hammerlab/tcr-transfer
Explore an alternative way to clone TILs by first single-cell TCR-seq'ing them and then transforming non-exhausted T cells with these TIL TCRs