hammerlab/SmartCount

Issues

• Illumination Invariance

  #50 opened 5 years ago by eric-czech
  3

• Custom data operations change the state of the data frame without any easy way to revert back

  #75 opened 6 years ago by armish
  2

• Retraining for new microsccope

  #76 opened 6 years ago by eric-czech
  0

• Enable exports of partially annotated images

  #70 opened 6 years ago by eric-czech
  1

• Fix app apartment page slowness

  #63 opened 6 years ago by eric-czech
  0

• Add TravisCI

  #71 opened 6 years ago by eric-czech
  0

• Validate M-Ladder chip configs

  #69 opened 6 years ago by eric-czech
  5

• Support fluorescent intensity images

  #51 opened 6 years ago by eric-czech
  2

• Document models available in GS

  #72 opened 6 years ago by eric-czech
  1

• Add registration for extracted apartment images

  #48 opened 6 years ago by eric-czech
  2

• Resistant Cell Analysis

  #59 opened 6 years ago by eric-czech
  5

• Correcting Annotations

  #62 opened 6 years ago by yellenlab
  1

• Add end-to-end image processing unit tests

  #67 opened 6 years ago by eric-czech
  0

• Future Analysis Ideas

  #31 opened 6 years ago by eric-czech
  0

• Use multiple alignment markers in chips

  #52 opened 6 years ago by eric-czech
  0

• Support multiple cell types

  #57 opened 6 years ago by eric-czech
  0

• Incorporate methods to aggregate data across arrays

  #26 opened 6 years ago by eric-czech
  2

• Fix app bug with single time point datasets

  #55 opened 6 years ago by eric-czech
  1

• Add image exporter from app

  #44 opened 6 years ago by eric-czech
  1

• Establish a way to precisely define time points in an experiment

  #43 opened 6 years ago by eric-czech
  6

• Add analysis to show image capture timeline

  #53 opened 6 years ago by eric-czech
  1

• Add apartment image histogram analysis notebook

  #49 opened 6 years ago by eric-czech
  0

• Detection for 0 Cell Count after t=0

  #47 opened 6 years ago by eric-czech
  0

• Escaping/Entering Cells

  #46 opened 6 years ago by eric-czech
  0

• Add sanity check statistic for cell area segmented

  #45 opened 6 years ago by eric-czech
  0

• Add toggle for apartments filtered to n cells == 1 at time zero

  #39 opened 6 years ago by eric-czech
  1

• Need visualization of array heatmaps with fixed scales

  #40 opened 6 years ago by eric-czech
  1

• Determine imaging conditions that should be supported

  #2 opened 6 years ago by eric-czech
  2

• Retrain marker model without Mask-RCNN

  #20 opened 6 years ago by eric-czech
  1

• Create a better dataset for retraining digit classification model

  #22 opened 6 years ago by eric-czech
  2

• Apartment Confluence Stopper (aka detecting when an apartment is almost full)

  #27 opened 6 years ago by eric-czech
  1

• Add toggle for cell annotations in apartment images

  #32 opened 6 years ago by eric-czech
  1

• PyTables warning for large image databases

  #36 opened 6 years ago by eric-czech
  0

• Heatmap Colorscale Normalization

  #33 opened 6 years ago by eric-czech
  1

• Add more array heatmap metrics

  #34 opened 6 years ago by eric-czech
  1

• Consider a regularized growth rate estimator

  #21 opened 6 years ago by eric-czech
  0

• Issues w/ adding new chip configurations

  #16 opened 6 years ago by eric-czech
  2

• Determine scope for second iteration

  #9 opened 6 years ago by eric-czech
  8

• error in chip annotation config

  #15 opened 6 years ago by yellenlab
  3

• Z-plane interpretation

  #10 opened 6 years ago by eric-czech
  1

• Determine necessary training dataset size

  #3 opened 6 years ago by eric-czech
  3

• Identify and fix incomplete annotations

  #7 opened 6 years ago by eric-czech
  2

• Train multi-digit recognition model

  #5 opened 6 years ago by eric-czech
  2

• Annotate more training data

  #4 opened 6 years ago by eric-czech
  2