hammerlab/pileup.js

Issues

• pileup.js demo

  #551 opened 5 months ago by pravintargaryen
  0

• programmatically creating screenshots

  #542 opened 4 years ago by petermchale
  3

• Reference track formatting

  #540 opened 5 years ago by jodyphelan
  1

• Differences on Linux/macOS

  #541 opened 5 years ago by jodyphelan
  1

• Add Chromosome position

  #438 opened 5 years ago by ifll
  3

• community contributed plugin track

  #536 opened 5 years ago by Parul-Kudtarkar
  8

• Splicing doesn't appear to be handled correctly?

  #534 opened 5 years ago by choosehappy
  3

• track options are disabled if user defines options

  #529 opened 5 years ago by akmorrow13
  1

• PileupViewer Genotype Visualization Error

  #530 opened 5 years ago by abhim00
  2

• mango-viz fails to build miniconda2

  #527 opened 6 years ago by erictu
  1

• chr switching can cause genomic region to be out of bounds

  #526 opened 6 years ago by akmorrow13
  0

• Make "Loading Genotypes…" sign position absolute

  #525 opened 6 years ago by akmorrow13
  0

• Feature track height is 0px when there are no features in viewing window

  #500 opened 6 years ago by akmorrow13
  1

• VariantJson should not fail on empty variants

  #523 opened 6 years ago by akmorrow13
  1

• Remove mocha-phantomjs dependency

  #503 opened 6 years ago by akmorrow13
  2

• pileup.js doesn't work with node 12.0.0

  #517 opened 6 years ago by piotr-gawron
  3

• TypeError: vRead.read.debugString is not a function

  #494 opened 6 years ago by akmorrow13
  0

• Support GA4GH JSON through the Gene Track Visualization

  #506 opened 6 years ago by akmorrow13
  1

• Callback functions for track movement and chr switch

  #504 opened 6 years ago by kevinyao93
  1

• Issue with gene track when updating plot

  #498 opened 6 years ago by kevinyao93
  3

• Generalize pileup tiling to be consumed by features and variants viz

  #480 opened 6 years ago by akmorrow13
  0

• Loading long reads（nanopore） bam， always show loading alignments...(issued 1request).

  #502 opened 6 years ago by cangfengzhe
  0

• XMLHttpRequest is not defined

  #499 opened 6 years ago by kevinyao93
  3

• Use directly as React component?

  #475 opened 6 years ago by membranepotential
  1

• Chip-Seq support

  #495 opened 6 years ago by antonkulaga
  1

• Error when visualizing MT coordinates

  #486 opened 6 years ago by northwestwitch
  3

• Simple17.bb fails to display with `Cannot read property 'replace' of undefined`

  #477 opened 7 years ago by denisemauldin
  7

• Can the reads be sorted by the base?

  #476 opened 7 years ago by gilhornung
  0

• Next npm publish date

  #466 opened 7 years ago by akmorrow13
  2

• update to current GA4GH schema

  #469 opened 7 years ago by jpdna
  1

• Displaying overlapping genes

  #468 opened 7 years ago by robinandeer
  0

• GA4GHDataSource-test tests for incorrect number of return reads

  #459 opened 8 years ago by akmorrow13
  0

• Layout options for viewing multiple tracks

  #463 opened 7 years ago by Georgehe4
  2

• How do you use index chunks to speed up BAM retrieval?

  #462 opened 7 years ago by IDispose
  1

• How do you use pileup.js in an ASP.Net app?

  #461 opened 8 years ago by IDispose
  5

• Having trouble viewing BAMs

  #457 opened 8 years ago by emreatbina
  5

• Display names on tracks

  #456 opened 8 years ago by akmorrow13
  1

• Canvas for Coverage and Alignment cut short

  #439 opened 8 years ago by Georgehe4
  3

• Gene track shows genes at wrong locations

  #451 opened 8 years ago by cwuensch
  3

• Nucleotides are not shown at the beginning of the genome track

  #449 opened 8 years ago by etheleon
  7

• How are the props height and width set for viz elements?

  #452 opened 8 years ago by akmorrow13
  2

• Buffer class not found

  #448 opened 8 years ago by etheleon
  1

• Pileup emits HTTP requests to a bigbed with invalid header : Range:bytes=9074145-NaN

  #446 opened 8 years ago by max-l
  2

• Loading files from the filesystem

  #447 opened 8 years ago by nuin
  3

• REST API and documentation

  #445 opened 8 years ago by pavelber
  5

• Issues with visualisation of a large set of reads for one position

  #444 opened 8 years ago by cwuensch
  4

• Variants do not support ends

  #440 opened 8 years ago by Georgehe4
  3

• Pileup error in Chrome

  #437 opened 8 years ago by ifll
  3

• Pileup browser doesn't perform well when files are stored locally in the machine and not on a server

  #436 opened 8 years ago by ifll
  3

• Load alignments text jumpiness

  #434 opened 8 years ago by Georgehe4
  0