fataltes
PhD student in Computer Science. Interested in Computational Biology
University of Maryland at College ParkUS
Pinned Repositories
pufferfish
An efficient index for the colored, compacted, de Bruijn graph
rainbowfish
A succinct colored dBG representation
4-ExploratoryDataAnalysis_PeerAssessment1
bcalm
de Bruijn graph compaction in low memory
BGPRouting_ASRelationship
This is the code provided for our final project for FCN course (Fundamentals of Computer Networks). Our goal is finding ASes Relationships using their trace routes that we get from RIPE Atlas.
herRingShiny
Shiny codes for herring statistics and simulation results visualization
quickNBs
Quick Ipython notebooks that are used to calculate some basic stats for different tools
RapClust_OrphanReads
Extended version of rapclust that also counts on orphan reads in clustering the contigs.
mantis
Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index
fataltes's Repositories
fataltes/4-ExploratoryDataAnalysis_PeerAssessment1
fataltes/bcalm
de Bruijn graph compaction in low memory
fataltes/BGPRouting_ASRelationship
This is the code provided for our final project for FCN course (Fundamentals of Computer Networks). Our goal is finding ASes Relationships using their trace routes that we get from RIPE Atlas.
fataltes/herRingShiny
Shiny codes for herring statistics and simulation results visualization
fataltes/quickNBs
Quick Ipython notebooks that are used to calculate some basic stats for different tools
fataltes/RapClust_OrphanReads
Extended version of rapclust that also counts on orphan reads in clustering the contigs.
fataltes/bioMap
reduce dimensionality of the count matrix through biologically-aware dimensionality reduction
fataltes/cmsc858_hw1
fataltes/cmsc858_hw2
fataltes/ComputationalBiology_549
fataltes/cv
keep updated cv in this repository
fataltes/datasciencecoursera
This repository is specifically created for the specialization "Data Science"
fataltes/datasharing
This is the repository created for Dr. Leek readme file
fataltes/fataltes.github.io
A simple homepage
fataltes/feature_distribution
fataltes/GC-project-repo
a repository for project of course "Getting and Cleaning Data"
fataltes/pathwayBot
A chatbot specialized in pathway-related questions
fataltes/PeerAssessment1-repo
repository for peerAssessment 1 in Reproducable Research Course
fataltes/personal-jekyll-theme
:bowtie: { Personal } Jekyll theme
fataltes/prelim
fataltes/RPE
My RPE document
fataltes/RProgrammingAssignment2
This is a repository to save trace of programming assignment 2
fataltes/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments
fataltes/TwoPaCo
A fast constructor of the compressed de Bruijn graph from many genomes