Labkey Docker Image

IMPORTANT: This image is intended for local development and testing, and comes with no warranty of any kind.

Usage (Please refer to https://www.labkey.org/Documentation/list-grid.view?listId=634&query.sort=-releaseVersion to get LABKEY last version) :

Create your .env file with (the default settings):

# Set LabKey Admin User
DB_NAME=labkey
DB_USER=SA
DB_PASSWORD=labkeyDB

# Set Pgadmin Access
PGADMIN_DEFAULT_EMAIL=pgadmin4@pgadmin.org
PGADMIN_DEFAULT_PASSWORD=pgadmin

# Get LABKEY last version https://www.labkey.org/Documentation/list-grid.view?listId=634&query.sort=-releaseVersion
LABKEY_VERSION=18.3
LABKEY_DIST=18.3-61163.720-community

# Find labkey.xml as labkey/conf/labkey-postgresql.xml (refer to DB choice)
LABKEY_XML=labkey-postgresql.xml

# Create RStudio Password
RSTUDIO_PASSWORD=letmein

# Helper to Create a netrc file
LABKEY_MACHINE=labkey:8080/labkey
LABKEY_NETRC_LOGIN=user@labkey.org
LABKEY_NETRC_KEY=letmeinlabkey

Please save your .env file in your root folder.

Create the image

To create the image you will need do the following (Source file are already available in the git repository)

Build the image with LABKEY version and distribution arguments :

docker build labkey --build-arg LABKEY_VERSION=18.3 LABKEY_DIST=18.3-61163.720-community

Running LabKey Server Standalone in a container via docker-compose default config :

To run the image

## Run Labkey with postgresql, pgadmin4 and RStudio
docker-compose up -d

After few seconds, open http://:8080 to see the tomcat setup page. To Access labkey server use this URL : localhost:8080/labkey/

Pgadmin Config

URL : localhost:5050/browser
Host : postgresql
Port : 5432
Maintenance DB : labkey
User : SA
Password : labkeyDB