Pinned Repositories
anndata
Annotated data.
celotto_2023
scRNAseq unravels the transcriptional network underlying zebrafish retina regeneration
clapy
Proliferation rate estimation from continuous labeling assays
clasim
Simulation of continuous labeling assays
Gillespie
an implementation of the Gillespie algorithm
Heinke_2020
Diploid hepatocytes drive physiological liver renewal in adult humans
multistart-minimize
A multistart global optimization algorithm for SciPy
roeder_et_al_2022
SoundRecorder
A simple sound recording app implementing Material Design
fbnrst's Repositories
fbnrst/clapy
Proliferation rate estimation from continuous labeling assays
fbnrst/celotto_2023
scRNAseq unravels the transcriptional network underlying zebrafish retina regeneration
fbnrst/clasim
Simulation of continuous labeling assays
fbnrst/Heinke_2020
Diploid hepatocytes drive physiological liver renewal in adult humans
fbnrst/roeder_et_al_2022
fbnrst/Bio-image_Analysis_with_Python
Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecular and Cellular Bioengineering (CMCB) / University of Technology, TU Dresden
fbnrst/bioservices
Access to Biological Web Services from Python.
fbnrst/C14_liver
Analysis of C14 liver data
fbnrst/cellxgene-gateway-proxy-example
Cellxgene proxy example setup
fbnrst/covpipe
fbnrst/dcgc-single-cell-1
fbnrst/diffxpy
Differential expression analysis for single-cell RNA-seq data.
fbnrst/expert-sniffle
fbnrst/gcf-docker
Docker files for autmated buids at dockerhub
fbnrst/haesleinhuepf.github.io
fbnrst/lange_single-cell_2019
Single cell sequencing analysis for Lange et al., 2019
fbnrst/lo2s
Linux OTF2 Sampling - A Lightweight Node-Level Performance Monitoring Tool
fbnrst/map-of-github-data
This repository contains tiles and data for the map of github
fbnrst/methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
fbnrst/metricq-python
🐍 The MetricQ Python interface
fbnrst/prior_et_al_2019
Supplementary Jupyter notebook to our article "Lgr5+ stem/progenitor cells reside at the apex of the embryonic hepatoblast pool"
fbnrst/pybiomart
A simple pythonic interface to biomart.
fbnrst/pypath
Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.
fbnrst/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
fbnrst/scdownstream
A single cell transcriptomics pipeline for QC, integration and making the data presentable
fbnrst/scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
fbnrst/single-cell-best-practices
https://www.sc-best-practices.org
fbnrst/singularity-action-test
fbnrst/spatialdata-notebooks
fbnrst/travis-ci
an example builder to build a container with Travis CI, and push to a Singularity Registry Server (or other endpoint)