fboehm/qtlbim

global variables defined multiple times

fboehm opened this issue · 4 comments

fboehm commented

https://stackoverflow.com/questions/14526153/multiple-definition-of-a-global-variable

I think that the solution on this stackoverflow post might be useful here.

fboehm commented

I'm currently unable to install qtlbim. I'm using R 4.0.3 and trying to install by remotes::install_github().

fboehm commented

Running /usr/lib/R/bin/R CMD INSTALL /tmp/RtmpUxnhj0/qtlbim_2.0.7.tar.gz --install-tests

  • installing to library ‘/home/fred/R/x86_64-pc-linux-gnu-library/4.0’
  • installing source package ‘qtlbim’ ...
    ** using staged installation
    ** libs
    gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c GlobalVars.c -o GlobalVars.o
    gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c GlobalVars_SingleTrait.c -o GlobalVars_SingleTrait.o
    gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c MatrixUtils.c -o MatrixUtils.o
    gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c MultipleTraitsMCMC.c -o MultipleTraitsMCMC.o
    gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RMultipleTraitsMCMCSetup.c -o RMultipleTraitsMCMCSetup.o
    gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ROutputManager.c -o ROutputManager.o
    gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RSingleTraitMCMCSetup.c -o RSingleTraitMCMCSetup.o
    gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SingleTraitMCMC.c -o SingleTraitMCMC.o
    gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SingleTraitMCMCSamplingRoutines.c -o SingleTraitMCMCSamplingRoutines.o
    gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c StatUtils.c -o StatUtils.o
    gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o qtlbim.so GlobalVars.o GlobalVars_SingleTrait.o MatrixUtils.o MultipleTraitsMCMC.o RMultipleTraitsMCMCSetup.o ROutputManager.o RSingleTraitMCMCSetup.o SingleTraitMCMC.o SingleTraitMCMCSamplingRoutines.o StatUtils.o -L/usr/lib/R/lib -lR
    MultipleTraitsMCMC.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:34: multiple definition of Y'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:77: first defined here /usr/bin/ld: MultipleTraitsMCMC.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:73: multiple definition of AMU'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:30: first defined here
    /usr/bin/ld: MultipleTraitsMCMC.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:43: multiple definition of GVALUE'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:79: first defined here /usr/bin/ld: MultipleTraitsMCMC.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:56: multiple definition of QCHR'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:13: first defined here
    /usr/bin/ld: MultipleTraitsMCMC.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:52: multiple definition of COEF'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:9: first defined here /usr/bin/ld: MultipleTraitsMCMC.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:83: multiple definition of MAIN'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:40: first defined here
    /usr/bin/ld: MultipleTraitsMCMC.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:75: multiple definition of GAMMA'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:32: first defined here '; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:54: first defined heredefinition of GAMMA_EPISTASIS
    /usr/bin/ld: MultipleTraitsMCMC.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:93: multiple definition of EPISTATIC'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:52: first defined here /usr/bin/ld: MultipleTraitsMCMC.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:103: multiple definition of GAMMA_GBYE'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:64: first defined here
    /usr/bin/ld: MultipleTraitsMCMC.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:67: multiple definition of GBYE_FIX'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:24: first defined here /usr/bin/ld: MultipleTraitsMCMC.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:77: multiple definition of VE'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:34: first defined here
    /usr/bin/ld: MultipleTraitsMCMC.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:87: multiple definition of VMAIN'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:44: first defined here /usr/bin/ld: MultipleTraitsMCMC.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:97: multiple definition of VEPISTASIS'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:56: first defined here
    defined hereMultipleTraitsMCMC.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:105: multiple definition of V_GBYE_FIX'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:66: first /usr/bin/ld: MultipleTraitsMCMC.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:61: multiple definition of FIX'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:18: first defined here
    /usr/bin/ld: MultipleTraitsMCMC.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:63: multiple definition of RAN'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:20: first defined here /usr/bin/ld: MultipleTraitsMCMC.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:65: multiple definition of VRAN'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:22: first defined here
    /usr/bin/ld: MultipleTraitsMCMC.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:54: multiple definition of QLOC'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:11: first defined here /usr/bin/ld: MultipleTraitsMCMC.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:26: multiple definition of GENO'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:75: first defined here
    /usr/bin/ld: MultipleTraitsMCMC.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:85: multiple definition of GAMMA_MAIN'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:42: first defined here /usr/bin/ld: RMultipleTraitsMCMCSetup.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:12: multiple definition of QTLLOC'; MultipleTraitsMCMC.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:12: first defined here
    /usr/bin/ld: RMultipleTraitsMCMCSetup.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:36: multiple definition of NPHENO'; MultipleTraitsMCMC.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:36: first defined here /usr/bin/ld: RMultipleTraitsMCMCSetup.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:38: multiple definition of MULTIPLE'; MultipleTraitsMCMC.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:38: first defined here
    /usr/bin/ld: RMultipleTraitsMCMCSetup.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:34: multiple definition of Y'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:77: first defined here eTraits.h:14: multiple definition of DiffLocation'; MultipleTraitsMCMC.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:14: first defined here
    /usr/bin/ld: RMultipleTraitsMCMCSetup.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:87: multiple definition of VMAIN'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:44: first defined here /usr/bin/ld: RMultipleTraitsMCMCSetup.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:97: multiple definition of VEPISTASIS'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:56: first defined here
    /usr/bin/ld: RMultipleTraitsMCMCSetup.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:105: multiple definition of V_GBYE_FIX'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:66: first defined here /usr/bin/ld: RMultipleTraitsMCMCSetup.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:73: multiple definition of AMU'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:30: first defined here
    /usr/bin/ld: RMultipleTraitsMCMCSetup.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:16: multiple definition of SIGMA'; MultipleTraitsMCMC.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:16: first defined here /usr/bin/ld: RMultipleTraitsMCMCSetup.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:83: multiple definition of MAIN'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:40: first defined here
    tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:52: first defined hereVars_MultipleTraits.h:93: multiple definition of EPISTATIC'; GlobalVars_SingleTrait.o:/ /usr/bin/ld: RMultipleTraitsMCMCSetup.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:43: multiple definition of GVALUE'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:79: first defined here
    /usr/bin/ld: RMultipleTraitsMCMCSetup.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:26: multiple definition of GENO'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:75: first defined here -usr/bin/ld: RMultipleTraitsMCMCSetup.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:52: multiple definition of COEF'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:9: first defined here
    /usr/bin/ld: RMultipleTraitsMCMCSetup.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:54: multiple definition of QLOC'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:11: first defined here /usr/bin/ld: RMultipleTraitsMCMCSetup.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:56: multiple definition of QCHR'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:13: first defined here
    /usr/bin/ld: RMultipleTraitsMCMCSetup.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:75: multiple definition of GAMMA'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:32: first defined here /usr/bin/ld: RMultipleTraitsMCMCSetup.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:85: multiple definition of GAMMA_MAIN'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:42: first defined here
    /usr/bin/ld: RMultipleTraitsMCMCSetup.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:95: multiple definition of GAMMA_EPISTASIS'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:54: first defined here /usr/bin/ld: RMultipleTraitsMCMCSetup.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:61: multiple definition of FIX'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:18: first defined here
    /usr/bin/ld: RMultipleTraitsMCMCSetup.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:63: multiple definition of RAN'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:20: first defined here lbim/src/GlobalVars_MultipleTraits.h:65: multiple definition of VRAN'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:22: first defined here
    /usr/bin/ld: RMultipleTraitsMCMCSetup.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:67: multiple definition of GBYE_FIX'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:24: first defined here /usr/bin/ld: RMultipleTraitsMCMCSetup.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:103: multiple definition of GAMMA_GBYE'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:64: first defined here
    /usr/bin/ld: RMultipleTraitsMCMCSetup.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:77: multiple definition of VE'; GlobalVars_SingleTrait.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_SingleTrait.c:34: first defined here /usr/bin/ld: RMultipleTraitsMCMCSetup.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:18: multiple definition of SCALE'; MultipleTraitsMCMC.o:/tmp/RtmpyQAn0K/R.INSTALL3e55394f648/qtlbim/src/GlobalVars_MultipleTraits.h:18: first defined here
    collect2: error: ld returned 1 exit status
    make: *** [/usr/share/R/share/make/shlib.mk:10: qtlbim.so] Error 1
    ERROR: compilation failed for package ‘qtlbim’
  • removing ‘/home/fred/R/x86_64-pc-linux-gnu-library/4.0/qtlbim’
    Error in (function (command = NULL, args = character(), error_on_status = TRUE, :
    System command 'R' failed, exit status: 1, stdout & stderr were printed
    Type .Last.error.trace to see where the error occured
    Error in validate_signal_args(msg, type, call, .subclass) :
    unused arguments (call, .subclass)
eddelbuettel commented

I believe I have this solved as well -- it now builds without the added -fcommon workaround.