Pinned Repositories
amchick
bac-genomics-scripts
Collection of scripts for bacterial genomics
BIO-ML
Command lines for the BIO-ML resources
biotyper
an R package to biotype a community
CMMG
Comprehensive mouse gut metagenome collection
dada2
Accurate sample inference from amplicon data with single nucleotide resolution
DivComAnalyses
Community Analysis and visualisation using R
metabaRpipe
an R package to process raw metabarcoding data into a phyloseq object using a single command
NRP72-FBT
omnibus-and-maaslin2-rscripts-and-hmp2-data
Omnibus and Maaslin2 Rscripts and hmp2-data
fconstancias's Repositories
fconstancias/metabaRpipe
an R package to process raw metabarcoding data into a phyloseq object using a single command
fconstancias/amchick
fconstancias/NRP72-FBT
fconstancias/DivComAnalyses
Community Analysis and visualisation using R
fconstancias/omnibus-and-maaslin2-rscripts-and-hmp2-data
Omnibus and Maaslin2 Rscripts and hmp2-data
fconstancias/bac-genomics-scripts
Collection of scripts for bacterial genomics
fconstancias/BIO-ML
Command lines for the BIO-ML resources
fconstancias/biotyper
an R package to biotype a community
fconstancias/CMMG
Comprehensive mouse gut metagenome collection
fconstancias/dada2
Accurate sample inference from amplicon data with single nucleotide resolution
fconstancias/dada2_guidelines
A repository with a general dada2 pipeline for amplicon processing
fconstancias/evolution
fconstancias/example-1
fconstancias/gitlab_training
fconstancias/metabarcoding
fconstancias/metabarcodingRpipeline
fconstancias/metabaRpipe-source
fconstancias/metagMisc
Miscellaneous functions for metagenomic analysis.
fconstancias/metaphlanR
R functions to process MetaPhlAn / HUMAnN metagenomic profilers
fconstancias/mock
fconstancias/oral-microbiome
fconstancias/syncomR
R package with wrapped functions for synthetic microbial community analysis.
fconstancias/trainings
The South Green platform has conducted a series of training courses for several years and this github repository gives access to all trainings.