Python3 Implementations of RNA Algorithms & uTilities
https://rna.informatik.uni-freiburg.de/Teaching/ (https://doi.org/10.1093/nar/gky329)
read Nussinov1978
Nussinov C++
read Wuchty1999
implement Wuchty Python implement Wuchty C++
Kabshch algorithm
Number of structures
Turner algorithm
McCaskill algorithm
Sankoff algorithm
pmcomp pmmulti (10.1093/bioinformatics/bth229)
SCFG
Furier transformations
bpseq <-> ct <-> dbn
stacking annotation
base pair annotation
pdb mmcif
urs loop classification
Hidden Markov Models
Global/Local Alignment
Tree edit & Tree alignment