The maximum number of sequences accepted using Web tool

Question

The maximum number of sequences accepted using Web tool

Opened this issue 4 years ago · 5 comments

I have ~17000 aligned Covid sequences in a fasta file that I would like to perform variant calling and annotation with Coronapp. The fasta file was too big for the webtool. How many sequences can I submit at once? Can I run your code from a different platform that I won't be limited by the number of sequences?

Thank you!

Answer 1 · 2020-10-05T15:33:03.000Z

Hi there. For those numbers, I can run them for you offline, or you can use the annotator.R script offline yourself :-) Federico

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On Mon, 5 Oct 2020 at 17:31, Shufan-uga ***@***.***> wrote: I have ~17000 aligned Covid sequences in a fasta file that I would like to perform variant calling and annotation with Coronapp. The fasta file was too big for the webtool. How many sequences can I submit at once? Can I run your code from a different platform that I won't be limited by the number of sequences? Thank you! — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#2>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAKWILBPNWH3RDSBGX2USCLSJHRGVANCNFSM4SE27AAQ> .

Answer 2 · 2020-10-05T15:35:16.000Z

Please run them offline for me. I will send the fasta file to you. How would like to recieve it?
I will also try running the annotator.R script myself to compare our results.

Answer 3 · 2020-10-05T15:47:55.000Z

Send me your email, I will send you the instructions :-) Federico

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On Mon, 5 Oct 2020 at 17:35, Shufan-uga ***@***.***> wrote: Please run them offline for me. I will send the fasta file to you. How would like to recieve it? I will also try running the annotator.R script myself to compare our results. — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#2 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAKWILBFBGOG76J3VCFUQZLSJHRULANCNFSM4SE27AAQ> .

Answer 4 · 2020-10-05T15:50:26.000Z

shufan.zhang@uga.edu. Thanks!

Answer 5 · 2021-07-07T10:38:05.000Z

Hello, I am also trying to run the script offline but I m having some difficulty. Can you send me some instructions as well?
Many Thanks