Efficient Bayesian multivariate surface regression that combines both additive splines and interactive splines, and a highly efficient Markov chain Monte Carlo algorithm to update all the knot locations jointly.
The code is written in native R and should be compatible with R version >= 2.12
This code is base on our published paper:
-
Li, F., & Villani, M. (2013). Efficient Bayesian multivariate surface regression. Scandinavian Journal of Statistics, 40(4), 706-723.
-
Please use this BibTeX entry to cite our work:
@article{li2013efficient,
title={Efficient Bayesian multivariate surface regression},
author={Li, Feng and Villani, Mattias},
journal={Scandinavian Journal of Statistics},
volume={40},
number={4},
pages={706--723},
year={2013},
publisher={Wiley Online Library}
}
- This package depends on Feng Li's
flutils
package. Please follow the link to download the latest version and install it.
devtools::install_github("feng-li/flutils")
- The package could be installed as a standard R library, provided that
flutils
anddevtools
are installed.
devtools::install_github("feng-li/movingknots")
Please take a look at the inst/examples
folder which contains a few setup templates for
configuring the model. You should edit the file to point the location of flutils
.
- You only need to use the
source
function to source the model template and the algorithm run automatically and the summary of the results will be printed on the R console. For example
source(file.path(system.file(package = "movingknots"), "examples","RUN_rajan_s_moving_2_plus_a_moving2.R"))
source(file.path(system.file(package = "movingknots"), "examples","RUN_rajan_s_moving_2_plus_a_moving2_SGLD.R"))
-
Make sure that
#! /usr/bin/Rscript
or#! /usr/bin/env Rscript
is on the first line of your R script. -
You need make sure the script is executable in a terminal
chmod +x movingknots/inst/examples/RUN_rajan_s_moving_2_plus_a_moving2.R
chmod +x movingknots/inst/examples/RUN_rajan_s_moving_2_plus_a_moving2_SGLD.R
- And then just execute it like other bash scripts
./movingknots/inst/examples/RUN_rajan_s_moving_2_plus_a_moving2.R
./movingknots/inst/examples/RUN_rajan_s_moving_2_plus_a_moving2_SGLD.R
Please visit issues for bug reports. For further assistance, please contact the package author Feng Li feng.li@cufe.edu.cn.