Pinned Repositories
100daysofcode-with-python-course
Course materials and handouts for #100DaysOfCode in Python course
Abs_bioinfo
Simple Bioinformatics project looking for mutations in antibody libraries compared to the control PG9 VDJ sequence
abstar
VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
antibody
Genetics algorithms library for Python 3.x
ASAP-SML
autoBLAST
A set of Python and Bash scripts for automated BLAST analysis of the flanking sequences of circular RNAs.
bio_tools
Useful bioinformatic scripts
Bioinformatics
biojs-io-clustal
Parses clustal files
CUMAb
fenggen2016's Repositories
fenggen2016/CUMAb
fenggen2016/100daysofcode-with-python-course
Course materials and handouts for #100DaysOfCode in Python course
fenggen2016/Abs_bioinfo
Simple Bioinformatics project looking for mutations in antibody libraries compared to the control PG9 VDJ sequence
fenggen2016/abstar
VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
fenggen2016/ASAP-SML
fenggen2016/bio_tools
Useful bioinformatic scripts
fenggen2016/CDR_bioinformatics
Trying to automatically pull out CDR loop sequences from a given antibody full sequence. Fairly rudimentary for now, but it works! Compares well to human selected CDR loop sequences.
fenggen2016/d2l-zh
《动手学深度学习》：面向中文读者、能运行、可讨论。英文版即伯克利“深度学习导论”教材。
fenggen2016/Deep-Learning-21-Examples
《21个项目玩转深度学习———基于TensorFlow的实践详解》配套代码
fenggen2016/deepchem
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
fenggen2016/DeepLearning
深度学习入门教程, 优秀文章, Deep Learning Tutorial
fenggen2016/DL_paper
This repo collects new Deep learning/Machine learning papers for protein research (especially antigen-antibody)
fenggen2016/epitopepredict
Python package for epitope prediction methods
fenggen2016/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
fenggen2016/EvoBind
In silico directed evolution of peptide binders with AlphaFold
fenggen2016/ExcelVBA
A library of Excel VBA functions and routines I use in projects
fenggen2016/intermine
A powerful open source data warehouse system
fenggen2016/LearnPython
以撸代码的形式学习Python
fenggen2016/mRNA-Stability-Prediction
fenggen2016/NeteaseCloudMusic-Download
免费下载网易云音乐歌单里所有收费的会员歌曲，并且保存到网易云上
fenggen2016/openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
fenggen2016/PaddleHub
Awesome pre-trained models toolkit based on PaddlePaddle.（180+ models including CV, NLP, Audio and Video with Easy Inference & Serving deployment)
fenggen2016/ProteinMPNN
Code for the ProteinMPNN paper
fenggen2016/Python
All Algorithms implemented in Python
fenggen2016/Python-100-Days
Python - 100天从新手到大师
fenggen2016/Python-Core-50-Courses
Python语言基础50课
fenggen2016/Python-Interview-Bible
Python面试宝典2020版
fenggen2016/segment-parser
A parser for immune receptor gene data, mainly IMGT references
fenggen2016/SPUX
Mutation analysis of combinatorial antibody libraries
fenggen2016/TeachingLectures
These are the lecture slides and lecture notes for courses that I have taught