fenghuijian
Major in bioinformatics and know a little computational biology
CHINESE ACADEMY OF SCIENCESChina
Pinned Repositories
BCSS
A Bridge Connecting Seurat and Scanpy
cellassign
Automated, probabilistic assignment of cell types in scRNA-seq data
doc
learning document
fenghuijian
Config files for my GitHub profile.
fenghuijian.github.io
FindPairs
Finding the intercellular interaction pairs
garnett
Automated cell type classification
Harmony
Harmony framework for connecting scRNA-seq data from discrete time points
jupyter-resource-usage
Jupyter Notebook Extension for monitoring your own Resource Usage
MySoftware
fenghuijian's Repositories
fenghuijian/MySoftware
fenghuijian/BCSS
A Bridge Connecting Seurat and Scanpy
fenghuijian/cellassign
Automated, probabilistic assignment of cell types in scRNA-seq data
fenghuijian/doc
learning document
fenghuijian/fenghuijian
Config files for my GitHub profile.
fenghuijian/fenghuijian.github.io
fenghuijian/FindPairs
Finding the intercellular interaction pairs
fenghuijian/garnett
Automated cell type classification
fenghuijian/Harmony
Harmony framework for connecting scRNA-seq data from discrete time points
fenghuijian/jupyter-resource-usage
Jupyter Notebook Extension for monitoring your own Resource Usage
fenghuijian/MyPicGo
fenghuijian/pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
fenghuijian/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
fenghuijian/seurat
R toolkit for single cell genomics
fenghuijian/STAR
RNA-seq aligner
fenghuijian/tqdm
A Fast, Extensible Progress Bar for Python and CLI
fenghuijian/velocyto.R
RNA velocity estimation in R