Pinned Repositories
academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
agusmakmun.github.io
:raised_hands: Free and open-source Jekyll theme
ASMC
Ascertained Sequentially Markovian Coalescent
atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
ATACseq
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
atacseq-1
ATAC-seq peak-calling, QC and differential analysis pipeline
bedops
:microscope: BEDOPS: high-performance genomic feature operations
biotools
A list of useful bioinformatics resources
BRB-seqTools
Suite of tools for processing BRB-seq data
cheatsheets
My cheatsheets
fengpku's Repositories
fengpku/ASMC
Ascertained Sequentially Markovian Coalescent
fengpku/ATACseq
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
fengpku/atacseq-1
ATAC-seq peak-calling, QC and differential analysis pipeline
fengpku/bedops
:microscope: BEDOPS: high-performance genomic feature operations
fengpku/biotools
A list of useful bioinformatics resources
fengpku/cheatsheets
My cheatsheets
fengpku/ClinicalGradeDNAseq
Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at read-depth>18
fengpku/clues
Approximate full likelihood inference of selection / inferring allele frequency trajectories
fengpku/d3
Bring data to life with SVG, Canvas and HTML. :bar_chart::chart_with_upwards_trend::tada:
fengpku/fengpku.github.io
fengpku/free-programming-books
:books: Freely available programming books
fengpku/gnomad_methods
Hail helper functions for the gnomAD project and Translational Genomics Group
fengpku/GRoSS
Graph-aware Retrieval of Selective Sweeps
fengpku/HiC-Pro
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
fengpku/HiCExplorer
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
fengpku/higlass
Fast large scale matrix visualization for the web.
fengpku/iMKTData
Pipeline to extract unfolded site frequency spectrum from 1000GP VCF and DGN alignments
fengpku/LR_SV
Long Read SVs
fengpku/MBE_data_2021
fengpku/MitoZ
MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
fengpku/ngsTools-1
Programs to analyse NGS data for population genetics purposes
fengpku/online-cv
A minimal Jekyll Theme to host your resume (CV)
fengpku/plink
fengpku/post-GWAS-pipeline
A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
fengpku/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
fengpku/seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
fengpku/snp-selex
fengpku/svaba
Structural variation and indel detection by local assembly
fengpku/vcf2sfs
R functions for generating site frequency spectra (SFS) from a VCF file.
fengpku/vcflib
C++ library and cmdline tools for parsing and manipulating VCF files