Pinned Repositories
2019_EMBL-ABR_Snakemake_webinar
Scripts and Snakemake pipeline used in the EMBL-ABR webinar
33-Eucs
Scripts for all Eucalyptus paper
assembly-pipeline
Blast-results-for-E.-melliodora-SV-contigs
canu-2.0
A single molecule sequence assembler for genomes large and small.
canu_1.8
cvfCompare
Compares two vcfs and determines the accuracy %.
ONT-Basecaller-training
Scripts for training a basecaller model with bonito
Polymorphic-interspecies-SVs
Synteny-and-rearrangement-of-3-Eucalyptus
Alignment and analysis scripts for "Long-read genome assemblies uncover extensive loss of micro-syntenty and conservation of macro-synteny among three woodland Eucalyptus species."
fergsc's Repositories
fergsc/ONT-Basecaller-training
Scripts for training a basecaller model with bonito
fergsc/2019_EMBL-ABR_Snakemake_webinar
Scripts and Snakemake pipeline used in the EMBL-ABR webinar
fergsc/33-Eucs
Scripts for all Eucalyptus paper
fergsc/assembly-pipeline
fergsc/Blast-results-for-E.-melliodora-SV-contigs
fergsc/canu-2.0
A single molecule sequence assembler for genomes large and small.
fergsc/canu_1.8
fergsc/cvfCompare
Compares two vcfs and determines the accuracy %.
fergsc/DartToVCF
Convert dart formatted variant data to vcf formatted.
fergsc/OpenMP-C
Workshop material for OpenMP-C at NCI
fergsc/Parsing-RepeatMasker-Outputs
Few scripts facilitating the extraction of info from Repeat Masker .out files
fergsc/Polymorphic-interspecies-SVs
fergsc/Synteny-and-rearrangement-of-3-Eucalyptus
Alignment and analysis scripts for "Long-read genome assemblies uncover extensive loss of micro-syntenty and conservation of macro-synteny among three woodland Eucalyptus species."
fergsc/RepeatMasker
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
fergsc/TALON
Technology agnostic long read analysis pipeline for transcriptomes
fergsc/vcfRemoveVariants
Randomly remove x% or variants from 1 to all samples in a vcf.