Pinned Repositories
2019-snakemake-ucdavis
Intro to workflows for efficient automated data analysis, using snakemake.
bgmm
Gaussian Mixture Modeling algorithms. Including the belief-based mixture modeling [R package]
BiG-SCAPE
Similarity networks of biosynthetic gene clusters
BOSS
A new algorithm for scaffolding
FFM_et_al_2017_MolEcol-
Scripts and additional material for the manuscript: ITS1 Metabarcoding highlights the low specificity of lichen mycobiomes at a local scale.
funannotate
Eukaryotic Genome Annotation Pipeline
funannotate-docker
Docker container for the funannotate genome annotation pipeline
funannotate-singularity
Fungal_phylogenomics
Curso de filogenémica de hongos Madrid 17.5.2019
FUNGuild
FUNGuild: parsing OTUs into functional guilds
ferninfm's Repositories
ferninfm/Fungal_phylogenomics
Curso de filogenémica de hongos Madrid 17.5.2019
ferninfm/2019-snakemake-ucdavis
Intro to workflows for efficient automated data analysis, using snakemake.
ferninfm/bgmm
Gaussian Mixture Modeling algorithms. Including the belief-based mixture modeling [R package]
ferninfm/BiG-SCAPE
Similarity networks of biosynthetic gene clusters
ferninfm/BOSS
A new algorithm for scaffolding
ferninfm/FFM_et_al_2017_MolEcol-
Scripts and additional material for the manuscript: ITS1 Metabarcoding highlights the low specificity of lichen mycobiomes at a local scale.
ferninfm/funannotate
Eukaryotic Genome Annotation Pipeline
ferninfm/funannotate-docker
Docker container for the funannotate genome annotation pipeline
ferninfm/funannotate-singularity
ferninfm/FUNGuild
FUNGuild: parsing OTUs into functional guilds
ferninfm/Hyperdiversity_project_webpage
ferninfm/kentUtils
UCSC command line bioinformatic utilities
ferninfm/OrthoFinder
Phylogenetic orthology inference for comparative genomics
ferninfm/phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
ferninfm/pyrenodesmia_phylogenetics
ferninfm/pyrenodesmia_phylogenomics
ferninfm/scripts
Assorted scripts useful for phylogenomics and population genomics pipelines
ferninfm/Singularity
ferninfm/tagseq-qiime2-snakemake
Pipeline to run qiime2 with snakemake