fgualdr
Francesco Gualdrini, PhD is a senior Computational Biologist / Bioinformatician / Biotechnologist
European Institute of OncologyMilan Italy
Pinned Repositories
Basic_NGS_Pipes
general BASH pipe for NGS tech to use on PBS Pro HPC
CKISCREEN_analysis_2022
Code and data to reproduce the manuscript analysis.
cobratoolbox
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
CRISPRFACS_simulation
Simulation for CRISPR pool screen coupled to FACS sorting
crisprSNF
Nextflow pipeline to process Crispr gRNA screenings
docker-conda-envressential
docker-conda-envRessential
GeneralNormalizer
GeneralNormalizer is able to normalise any numeric matrix assuming skewed normal distribution in pair-wise fold change
maurice_etal_2023_MRTF_SRF_IL2delivery
mmatac
mmchipseq
fgualdr's Repositories
fgualdr/Basic_NGS_Pipes
general BASH pipe for NGS tech to use on PBS Pro HPC
fgualdr/CKISCREEN_analysis_2022
Code and data to reproduce the manuscript analysis.
fgualdr/cobratoolbox
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
fgualdr/CRISPRFACS_simulation
Simulation for CRISPR pool screen coupled to FACS sorting
fgualdr/crisprSNF
Nextflow pipeline to process Crispr gRNA screenings
fgualdr/docker-conda-envressential
docker-conda-envRessential
fgualdr/GeneralNormalizer
GeneralNormalizer is able to normalise any numeric matrix assuming skewed normal distribution in pair-wise fold change
fgualdr/maurice_etal_2023_MRTF_SRF_IL2delivery
fgualdr/mmatac
fgualdr/mmchipseq
fgualdr/mmrnaseq
nf-core/RNAseq inspired workflow which takes into account multi mappers repositioning using EM-BAesian algorithm
fgualdr/multi-package-containers
Testing building mulled containers for multi-requirement tools.
fgualdr/MultiClassXGBOOST
fgualdr/nfSQuIRE
Conversion of "Software for Quantifying Interspersed Repeat Expression" in Nextflow