Example GL File
gaxyz opened this issue · 3 comments
gaxyz commented
Hello,
I am trying to run ngsLD, but I am having trouble figuring out the correct input format for genotype likelihoods. I tried beagle gzipped output and a modified version of it (for only one individual and four loci):
-1 0 0.333333 0.333333
0 -1 0.458889 0.541111
0 2 0.000000 1.000000
-1 0 1.000000 0.000000
But it does not work (error:cannot read GZip GENO file. Check GENO file and number of sites!
).
Could you please provide an example GL file?
Thanks!
gaston
gaxyz commented
Thanks for the prompt response. Just to be certain, it accepts beagle format as input?
fgvieira commented
yes, but is´t has to be gziped