Issues
- 6
> Header found! Skipping line...
#55 opened by Banthandor - 8
ngsLD sometimes hangs indefinitely
#20 opened by James-S-Santangelo - 4
Output files too large.
#54 opened by JdrrCosta - 1
- 20
Ideas for speeding up prune_graph.pl
#39 opened by jtoy7 - 8
ANGSD VCF reformatting
#52 opened by NicMAlexandre - 3
- 5
How to get p values for significant LD?
#51 opened by beausoleilmo - 3
invalid distance between adjacent sites
#7 opened by etwatson - 4
Error in type.convert.default(data[[i]], as.is = as.is[i], dec = dec, : long vectors not supported yet: ../../../include/Rinlinedfuns.h:537
#50 opened by jcaccavo - 5
.ld file format issue. two additional columns
#45 opened by jmhallas - 2
- 8
- 4
ngsLD unable to read genotype input file
#47 opened by BKrek89 - 5
LD values are NA for r2 EM and D prime EM
#44 opened by aguilar-gomez - 16
Value Error in prune_ngsLD.py
#43 opened by TrishikaS - 1
prune_ngsLD.py error
#41 opened by Andrew-N-Black - 0
Hardcoded BUFF_LEN with larger numbers of samples
#42 opened by russcd - 2
program killed
#40 opened by clydeandforth - 13
LD pruning issue
#29 opened by TrishikaS - 10
ERROR: [read_dist] invalid distance between adjacent sites! with multiple contigs
#38 opened by beausoleilmo - 1
`LD_blocks.sh` is not functional
#37 opened by cbird808 - 3
- 1
Reading data from file... Killed
#35 opened by mayroberts - 2
missing GL/GP data
#32 opened by cbird808 - 2
clarification of options
#33 opened by cbird808 - 1
missing data affects `--min_maf`
#34 opened by cbird808 - 9
- 5
Does this pruning method seem appropriate? Plus, uncertainty about pruning beagle format
#25 opened by zjnolen - 2
[read_geno] cannot read GZip GENO file
#28 opened by katcatalano - 3
Example GL File
#27 opened by gaxyz - 1
'cannot allocate more memory!' error
#26 opened by andrewSharo - 5
ngsLD usage
#15 opened by elizeng - 1
- 1
ngsld pruning running forever
#21 opened by HomereAMK - 8
- 3
- 6
- 1
- 8
ngsLD removed a large number of linked sites
#10 opened by biozzq - 8
LD between chr/contig names
#17 opened by anne-laureferchaud - 2
- 2
compilation error with ubuntu 14.04
#14 opened by hrwang - 4
- 6
.geno files not accepted.
#11 opened by cdomsar - 1
Header found! Skipping line...
#13 opened by debjyoti88 - 1
- 1
--min_weight flag what does it do?
#5 opened by albinap - 2
- 0
sorry mistake - please delete
#6 opened by albinap