fgypas

Bioinformatics Software Engineer @Novartis

Bioinformatics Software Engineer at Novartis Institutes for BioMedical Research (NIBR)Basel

Pinned Repositories

cwl-WES
Trigger CWL workflows via GA4GH WES and TES
Language:Python16 29 10218
.vim
My Vim configuration files
Language:Vim script0 2 00
atom
:atom: The hackable text editor
Language:JavaScript1 1 00
CWL-assembly
Language:Common Workflow Language1 2 02
panoptes
Monitor computational workflows in real time
Language:HTML1 1 350
panoptes
Monitor computational workflows in real time
Language:CSS68 6 10118
TECtool
TECtool uses mRNA and 3’ end sequencing data to identify novel terminal exons.
Language:Python7 8 55
zarp
The Zavolab Automated RNA-seq Pipeline
Language:Python35 6 915
zgtf
gtf conversion utlity
Language:Python0 5 41
zpca
PCA analysis
Language:Python1 5 50

fgypas's Repositories

fgypas/atom
:atom: The hackable text editor
Language:JavaScript1 1 00
fgypas/CWL-assembly
Language:Common Workflow Language1 2 02
fgypas/panoptes
Monitor computational workflows in real time
Language:HTML1 1 350
fgypas/.vim
My Vim configuration files
Language:Vim script0 2 00
fgypas/AlignmentExtraction
Language:Perl0 2 00
fgypas/angry-pink-purse
Who knows what can you find inside?
1 0
fgypas/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell1 0
fgypas/black
The uncompromising Python code formatter
Language:Python0 0
fgypas/cryptopunks
Collectible 8-bit characters on the Ethereum blockchain.
Language:JavaScript1 0
fgypas/cwl-example-workflows
Example workflows written in CWL
Language:Common Workflow Language6
fgypas/cwl-tes
cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.
Language:Python2 0
fgypas/CWL_test_pAp
Language:Common Workflow Language2 0
fgypas/dash-bio
Open-source bioinformatics components for Dash
fgypas/Dockerfile_R_example
Example of dockerfile using R
2 0
fgypas/fgypas.github.io
Language:HTML1 0
fgypas/guppy3
guppy / heapy ported to Python3. It works for real!
Language:Python1 0
fgypas/IGV-snapshot-automator
Script to automatically create and run IGV snapshot batchscripts
Language:Python2 0
fgypas/latency-test
Language:Python2 0
fgypas/mirzag_cwl_docker
Docker image for MIRZAG with CWL
2 0
fgypas/MultiMarkdown
Expanded perl version of John Gruber's original Markdown --- No longer under active development since MMD 3
Language:Perl
fgypas/omniCLIP
omniCLIP is a CLIP-Seq peak caller
Language:Python0 0
fgypas/Sketches-with-Python
This Python Script converts an image into a sktech, made using OpenCV.
Language:Jupyter Notebook1 0
fgypas/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
Language:HTML0 0
fgypas/snakemake-workflow-template
A cookiecutter template for a snakemake-workflow readme file
Language:Python0 0
fgypas/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
Language:Python
fgypas/tectool_docker
TECtool with docker
fgypas/Whippet.jl
Lightweight and Fast; RNA-seq quantification at the event-level
Language:Julia2 0
fgypas/zarp
Zavolan-Lab Automated RNA-Seq Pipeline
Language:Python0 0