Pinned Repositories
deepTools
Tools to process and analyze deep sequencing data.
HiCExplorer
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
bioconda-recipes
Conda recipes for the bioconda channel.
cellxgene-gateway
Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.
DBG2OLC
The genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long erroneous 3GS sequencing reads and short accurate NGS sequencing reads.
goatools
Python scripts to find enrichment of GO terms
pyBigWig
A python extension for quick access to bigWig files
scanpy
Single-cell analysis in Python. Scales to >1M cells.
fidelram's Repositories
fidelram/goatools
Python scripts to find enrichment of GO terms
fidelram/pyBigWig
A python extension for quick access to bigWig files
fidelram/bioconda-recipes
Conda recipes for the bioconda channel.
fidelram/cellxgene-gateway
Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.
fidelram/DBG2OLC
The genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long erroneous 3GS sequencing reads and short accurate NGS sequencing reads.
fidelram/log.bio
Log command line events to a graph database :)
fidelram/matplotlib
matplotlib: plotting with Python
fidelram/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
fidelram/scanpy-tutorials
Scanpy Tutorials.
fidelram/scanpy_usage
Scanpy use cases.
fidelram/scvelo
Stochastic Single Cell RNA Velocity
fidelram/sphinx-argparse
Sphinx extension that automatically document argparse commands and options