Incompatible with BigDataViewer v10
ctrueden opened this issue · 2 comments
ctrueden commented
I am preparing to make a new release of Fiji with newer component versions. Unfortunately, the update of BDV to 10.2.0 breaks compilation of this project:
Build log
$ mvn -Dbigdataviewer-core.version=10.2.0 clean test
[INFO] Scanning for projects...
[INFO]
[INFO] ---------------------< sc.fiji:SPIM_Registration >----------------------
[INFO] Building SPIM Registration 5.0.22-SNAPSHOT
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ SPIM_Registration ---
[INFO] Deleting /home/curtis/code/fiji/SPIM_Registration/target
[INFO]
[INFO] --- maven-enforcer-plugin:3.0.0-M3:enforce (enforce-rules) @ SPIM_Registration ---
[INFO] Adding ignore: module-info
[INFO] Adding ignore: META-INF/versions/*/module-info
[INFO] Adding ignore: com.esotericsoftware.kryo.*
[INFO] Adding ignore: com.esotericsoftware.minlog.*
[INFO] Adding ignore: com.esotericsoftware.reflectasm.*
[INFO] Adding ignore: com.google.inject.*
[INFO] Adding ignore: jnr.ffi.*
[INFO] Adding ignore: org.apache.hadoop.yarn.*.package-info
[INFO] Adding ignore: org.apache.spark.unused.UnusedStubClass
[INFO] Adding ignore: org.hibernate.stat.ConcurrentStatisticsImpl
[INFO] Adding ignore: org.jetbrains.kotlin.daemon.common.*
[INFO] Adding ignore: org.junit.runner.Runner
[INFO] Adding ignore: module-info
[INFO] Adding ignore: module-info
[INFO]
[INFO] --- build-helper-maven-plugin:3.0.0:regex-property (sanitize-version) @ SPIM_Registration ---
[INFO]
[INFO] --- build-helper-maven-plugin:3.0.0:regex-property (guess-package) @ SPIM_Registration ---
[INFO]
[INFO] --- buildnumber-maven-plugin:1.4:create (default) @ SPIM_Registration ---
[INFO] Executing: /bin/sh -c cd '/home/curtis/code/fiji/SPIM_Registration' && 'git' 'rev-parse' '--verify' 'HEAD'
[INFO] Working directory: /home/curtis/code/fiji/SPIM_Registration
[INFO] Storing buildNumber: 3c6736fe73ed873efa821908e4d172fdd6444cac at timestamp: 1631223027245
[INFO] Storing buildScmBranch: master
[INFO]
[INFO] --- scijava-maven-plugin:2.0.0:set-rootdir (set-rootdir) @ SPIM_Registration ---
[INFO] Setting rootdir: /home/curtis/code/fiji/SPIM_Registration
[INFO]
[INFO] --- jacoco-maven-plugin:0.8.6:prepare-agent (jacoco-initialize) @ SPIM_Registration ---
[INFO] argLine set to -javaagent:/home/curtis/.m2/repository/org/jacoco/org.jacoco.agent/0.8.6/org.jacoco.agent-0.8.6-runtime.jar=destfile=/home/curtis/code/fiji/SPIM_Registration/target/jacoco.exec
[INFO]
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ SPIM_Registration ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ SPIM_Registration ---
[INFO] Compiling 405 source files to /home/curtis/code/fiji/SPIM_Registration/target/classes
[INFO] /home/curtis/code/fiji/SPIM_Registration/src/main/java/spim/fiji/spimdata/explorer/ViewSetupExplorerPanel.java: Some input files use or override a deprecated API.
[INFO] /home/curtis/code/fiji/SPIM_Registration/src/main/java/spim/fiji/spimdata/explorer/ViewSetupExplorerPanel.java: Recompile with -Xlint:deprecation for details.
[INFO] /home/curtis/code/fiji/SPIM_Registration/src/main/java/mpicbg/spim/mpicbg/PointMatchGeneric.java: Some input files use unchecked or unsafe operations.
[INFO] /home/curtis/code/fiji/SPIM_Registration/src/main/java/mpicbg/spim/mpicbg/PointMatchGeneric.java: Recompile with -Xlint:unchecked for details.
[INFO] Some messages have been simplified; recompile with -Xdiags:verbose to get full output
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR] /home/curtis/code/fiji/SPIM_Registration/src/main/java/spim/fiji/spimdata/explorer/interestpoint/InterestPointExplorer.java:[128,82] incompatible types: spim.fiji.spimdata.explorer.interestpoint.InterestPointOverlay cannot be converted to bdv.viewer.TransformListener<net.imglib2.realtransform.AffineTransform3D>
[ERROR] /home/curtis/code/fiji/SPIM_Registration/src/main/java/spim/fiji/spimdata/explorer/interestpoint/InterestPointExplorer.java:[129,93] incompatible types: spim.fiji.spimdata.explorer.interestpoint.InterestPointOverlay cannot be converted to bdv.viewer.OverlayRenderer
[ERROR] /home/curtis/code/fiji/SPIM_Registration/src/main/java/spim/fiji/spimdata/explorer/interestpoint/InterestPointTableModel.java:[244,77] incompatible types: spim.fiji.spimdata.explorer.interestpoint.InterestPointOverlay cannot be converted to bdv.viewer.TransformListener<net.imglib2.realtransform.AffineTransform3D>
[ERROR] /home/curtis/code/fiji/SPIM_Registration/src/main/java/spim/fiji/spimdata/explorer/interestpoint/InterestPointTableModel.java:[245,82] incompatible types: spim.fiji.spimdata.explorer.interestpoint.InterestPointOverlay cannot be converted to bdv.viewer.OverlayRenderer
[INFO] 4 errors
[INFO] -------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 5.885 s
[INFO] Finished at: 2021-09-09T16:30:30-05:00
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.8.1:compile (default-compile) on project SPIM_Registration: Compilation failure: Compilation failure:
[ERROR] /home/curtis/code/fiji/SPIM_Registration/src/main/java/spim/fiji/spimdata/explorer/interestpoint/InterestPointExplorer.java:[128,82] incompatible types: spim.fiji.spimdata.explorer.interestpoint.InterestPointOverlay cannot be converted to bdv.viewer.TransformListener<net.imglib2.realtransform.AffineTransform3D>
[ERROR] /home/curtis/code/fiji/SPIM_Registration/src/main/java/spim/fiji/spimdata/explorer/interestpoint/InterestPointExplorer.java:[129,93] incompatible types: spim.fiji.spimdata.explorer.interestpoint.InterestPointOverlay cannot be converted to bdv.viewer.OverlayRenderer
[ERROR] /home/curtis/code/fiji/SPIM_Registration/src/main/java/spim/fiji/spimdata/explorer/interestpoint/InterestPointTableModel.java:[244,77] incompatible types: spim.fiji.spimdata.explorer.interestpoint.InterestPointOverlay cannot be converted to bdv.viewer.TransformListener<net.imglib2.realtransform.AffineTransform3D>
[ERROR] /home/curtis/code/fiji/SPIM_Registration/src/main/java/spim/fiji/spimdata/explorer/interestpoint/InterestPointTableModel.java:[245,82] incompatible types: spim.fiji.spimdata.explorer.interestpoint.InterestPointOverlay cannot be converted to bdv.viewer.OverlayRenderer
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
I wonder if anyone ever uses this component anymore, since no problems have been reported here since 2018, whereas bigdataviewer-core 10.2.0 was uploaded to the Java-8 update site already more than half a year ago (2021-02-22).
@tpietzsch Is this something you can advise on how to fix?