Fiji

A "batteries included" distribution of ImageJ for scientific image analysis

Pinned Repositories

AnalyzeSkeleton
ImageJ/Fiji plugin to analyze 2D and 3D skeleton images
Language:Java26 17 821
Auto_Threshold
Language:Java42 20 330
bUnwarpJ
ImageJ/Fiji plugin for consistent elastic registration of 2D images
Language:Java23 17 1310
Colocalisation_Analysis
Fiji's plugin for colocalization analysis
Language:Java26 19 5617
cookbook
Plugins collated for the Fiji Cookbook
Language:Java25 20 85
fiji
A "batteries-included" distribution of ImageJ :battery:
Language:Shell781 53 273237
fiji.github.io
Fiji website
Language:HTML35 24 1011
SPIM_Registration
Deprecated, instead check out: https://github.com/preibischLab/multiview-reconstruction & https://github.com/PreibischLab/BigStitcher
Language:Java23 23 9922
Stitching
Fiji's Stitching plugins reconstruct big images from tiled input images.
Language:Java97 21 5764
Trainable_Segmentation
Fiji library to perform image segmentation based on the Weka learning schemes
Language:Java113 23 5561

Fiji's Repositories

fiji/fiji
A "batteries-included" distribution of ImageJ :battery:
Language:Shell781 53 273237
fiji/Trainable_Segmentation
Fiji library to perform image segmentation based on the Weka learning schemes
Language:Java113 23 5561
fiji/Stitching
Fiji's Stitching plugins reconstruct big images from tiled input images.
Language:Java97 21 5764
fiji/fiji.github.io
Fiji website
Language:HTML35 24 1011
fiji/Colocalisation_Analysis
Fiji's plugin for colocalization analysis
Language:Java26 19 5617
fiji/SPIM_Registration
Deprecated, instead check out: https://github.com/preibischLab/multiview-reconstruction & https://github.com/PreibischLab/BigStitcher
Language:Java23 23 9922
fiji/3D_Viewer
Language:Java20 24 2918
fiji/VIB
Language:Java14 17 533
fiji/Fiji_Plugins
Language:Java12 17 29
fiji/HDF5_Vibez
HDF5 plugin for ImageJ and Fiji.
Language:Java11 10 129
fiji/dockerfiles
Fiji Dockerfiles for Docker builds.
Language:Dockerfile8 8 199
fiji/IO
Language:Java6 18 624
fiji/LocalThickness
Language:Java6 14 33
fiji/Correct_3D_Drift
Language:Python5 8 62
fiji/Descriptor_based_registration
Language:Java4 15 26
fiji/CorrectBleach
Language:Java3 18 34
fiji/learnathon-2019
Collection of material for the 2019 Learnathon
Language:Java3 12 02
fiji/simplified-io
Read, write, type convert images using simple methods.
Language:Java3 8 14
fiji/3D_Blob_Segmentation
Language:Java2 15 01
fiji/Image_5D
A plugin to extend image stacks to 5 dimensions: x, y, channel (color), slice (z), frame (t).
Language:Java2 19 31
fiji/View5D
Language:Java2 15 21
fiji/Volume_Calculator
Language:Java2 17 04
fiji/legacy-imglib1
OBSOLETE; see https://github.com/imglib/imglib2
Language:Java1 12 31
fiji/Stochastic_Denoise
Language:Java1 7 11
fiji/Volume_Viewer
Language:Java1 17 45
fiji/blockmatching
Language:Java8 03
fiji/CPU_Meter
Language:Java15 01
fiji/dotfiles
Configuration files for Fiji resources
5 0
fiji/learnathon-2017
Collection of tutorial repositories for 2017 DAIS learnathon
Language:Shell12 01
fiji/old-school-repls
Fiji's original script interpreter plugins
Language:Java5 0