Pinned Repositories
AnalyzeSkeleton
ImageJ/Fiji plugin to analyze 2D and 3D skeleton images
Auto_Threshold
bUnwarpJ
ImageJ/Fiji plugin for consistent elastic registration of 2D images
Colocalisation_Analysis
Fiji's plugin for colocalization analysis
cookbook
Plugins collated for the Fiji Cookbook
fiji
A "batteries-included" distribution of ImageJ :battery:
fiji.github.io
Fiji website
SPIM_Registration
Deprecated, instead check out: https://github.com/preibischLab/multiview-reconstruction & https://github.com/PreibischLab/BigStitcher
Stitching
Fiji's Stitching plugins reconstruct big images from tiled input images.
Trainable_Segmentation
Fiji library to perform image segmentation based on the Weka learning schemes
Fiji's Repositories
fiji/javac
OBSOLETE
fiji/Jama
OBSOLETE; see http://central.maven.org/maven2/gov/nist/math/jama/1.0.3/
fiji/pom-fiji
OBSOLETE - Use https://github.com/scijava/pom-scijava instead!
fiji/fiji-compat
[OBSOLETE] Merged with fiji/fiji
fiji/Threshold_Colour
OBSOLETE; included with https://github.com/imagej/imagej1
fiji/fiji-historical
Fiji history prior to the root commit of fiji/fiji
fiji/Analyze_Reader_Writer
OBSOLETE - Merged into https://github.com/fiji/IO
fiji/BeanShell_Interpreter
OBSOLETE; see https://github.com/scijava/script-editor
fiji/CLI
OBSOLETE
fiji/Clojure_Interpreter
OBSOLETE; see https://github.com/scijava/script-editor
fiji/fake
OBSOLETE; see: https://github.com/scijava/minimaven
fiji/fiji-scripting
OBSOLETE; see https://github.com/scijava/script-editor
fiji/Fiji_Updater
OBSOLETE; see https://github.com/imagej/imagej-updater
fiji/ivussnakes
A Git-CVS clone of the 'ivussnakes' module of http://ivussnakes.cvs.sourceforge.net/viewvc/ivussnakes/
fiji/java6-linux32
Fiji's version of OpenJDK6 + Java 3D 1.5 for 32-bit Linux
fiji/java6-linux64
Fiji's version of OpenJDK6 + Java 3D 1.5 for 64-bit Linux
fiji/java6-win32
Fiji's version of OpenJDK6 + Java 3D 1.5 for 32-bit Windows
fiji/java6-win64
Fiji's version of OpenJDK6 + Java 3D 1.5 for 64-bit Windows
fiji/Javascript
OBSOLETE; see https://github.com/scijava/script-editor
fiji/JRuby_Interpreter
OBSOLETE; see https://github.com/scijava/script-editor
fiji/Jython_Interpreter
OBSOLETE; see https://github.com/scijava/script-editor
fiji/Live_Wire
A Git-CVS clone of the 'livewire' module of http://ivussnakes.cvs.sourceforge.net/viewvc/ivussnakes/
fiji/profilers
A bunch of useful profilers based on Javassist [UNMAINTAINED]
fiji/Refresh_Javas
OBSOLETE
fiji/Scala_Interpreter
OBSOLETE; see https://github.com/scijava/script-editor
fiji/Script_Launcher
OBSOLETE
fiji/Stitching_Tests
Regression tests for the ImageJ Stitching plugin
fiji/Updater_Fix
fiji/vib-historical
Virtual Insect Brain (VIB) history prior to Fiji integration