Pinned Repositories
Galaxy_Installer
Installs Galaxy automatically on macOS
GEDI-ORDER
Use cell morphology to determine if the cell is live or dead with a CNN.
Galaxy_Tool_Shed
An additional Galaxy Tool Shed for the Finkbeiner Lab's custom tools
FeatureAnalysis
Robo7
Cell picking microscope
AutoComet
Comet Assay
cellpose
a generalist algorithm for cellular segmentation
galaxy-helm
Galaxy under Kubernetes
amyb-plaque-detection
qupath-tooling
Custom extensions to QuPath - bioimage analysis & digital pathology
finkbeiner-lab's Repositories
finkbeiner-lab/datastudy
Analysis Pipeline Using Nextflow
finkbeiner-lab/GP-Image-Classification-1pass
finkbeiner-lab/Galaxy_Installer
Installs Galaxy automatically on macOS
finkbeiner-lab/amyb-plaque-detection
finkbeiner-lab/wsi-inference
finkbeiner-lab/Galaxy_Tool_Shed
An additional Galaxy Tool Shed for the Finkbeiner Lab's custom tools
finkbeiner-lab/GEDI-ORDER
Use cell morphology to determine if the cell is live or dead with a CNN.
finkbeiner-lab/semi-supervised-learning
This is a simple repository containing a single training script for fine-tuning DINO V2 with the DINO V1 loss for whole slide images in histopathology.
finkbeiner-lab/FeatureAnalysis
finkbeiner-lab/qupath-tooling
Custom extensions to QuPath - bioimage analysis & digital pathology
finkbeiner-lab/AutoComet
Comet Assay
finkbeiner-lab/active-learning
Active learning
finkbeiner-lab/galaxy-helm
Galaxy under Kubernetes
finkbeiner-lab/ByteTrack
[ECCV 2022] ByteTrack: Multi-Object Tracking by Associating Every Detection Box
finkbeiner-lab/trackformer
Implementation of "TrackFormer: Multi-Object Tracking with Transformers”. [Conference on Computer Vision and Pattern Recognition (CVPR), 2022]
finkbeiner-lab/TransTrack
Multiple Object Tracking with Transformer
finkbeiner-lab/Robo7
Cell picking microscope
finkbeiner-lab/cellpose
a generalist algorithm for cellular segmentation
finkbeiner-lab/microscopeimagequality