firasmidani

amiga

Analysis of Microbial Growth Assays

BacteroidesFlowCytometry

Library for the analysis of flow cytometry samples of multi-strain fluorescent microbial populations.

bayesian-gmm

Repo for Bayesian Guassian Mixture Models customized for analysis of flow-cytometry data

Bioreactors

fastq-quality-scoring

compute distribution of quality scores at each nucleotide base in a FASTQ file.

firasmidani.github.io

FlowCytometryWrangling

Repo for wrangling and analyzing flow cytometry data

MBSP

MicroBiome Stress Project

phenotypic-characterization

Repository for Analysis of Microbial Growth Assays (AMiGA)

Midani_Cholera_JID_2018

Repo of data and code for Midani et al paper in Journal of Infectious Diseases

firasmidani/amiga

Analysis of Microbial Growth Assays

firasmidani/MBSP

MicroBiome Stress Project

firasmidani/phenotypic-characterization

Repository for Analysis of Microbial Growth Assays (AMiGA)

firasmidani/BacteroidesFlowCytometry

Library for the analysis of flow cytometry samples of multi-strain fluorescent microbial populations.

firasmidani/bayesian-gmm

Repo for Bayesian Guassian Mixture Models customized for analysis of flow-cytometry data

firasmidani/Bioreactors

firasmidani/fastq-quality-scoring

compute distribution of quality scores at each nucleotide base in a FASTQ file.

firasmidani/firasmidani.github.io

firasmidani/FlowCytometryWrangling

Repo for wrangling and analyzing flow cytometry data

firasmidani/routines

houses bash and python scripts for routine tasks

firasmidani/Frontiers_Microbiology_2018

firasmidani/gp_growth_phenotype

firasmidani/ibiem

lemur gut microbiome variation project - IBIEM 2016/2017

firasmidani/kiko

routine plotting functions based on a Matplotlib base

firasmidani/microbiome_routines

houses code for performing routine tasks and analysis of microbiome data

firasmidani/mini-term-2014

firasmidani/styles

Official repository for Citation Style Language (CSL) citation styles.