Pinned Repositories
alluvial
Alluvial diagrams
atac-seq
atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
BBMap
(Not Offical) BBMap short read aligner, and other bioinformatic tools.
ChIP-seq-analysis
deeplearning4j
Deep Learning for Java, Scala & Clojure on Hadoop & Spark With GPUs - From Skymind
fastq-multx
Demultiplexes a fastq.
RunATAC
R package for processing and plotting ATAC-seq data
hrpi
Rmarkdown / compiled html files for human reprogramming dataset analysis
fjrossello's Repositories
fjrossello/atac-seq
fjrossello/RunATAC
R package for processing and plotting ATAC-seq data
fjrossello/alluvial
Alluvial diagrams
fjrossello/atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
fjrossello/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
fjrossello/BBMap
(Not Offical) BBMap short read aligner, and other bioinformatic tools.
fjrossello/ChIP-seq-analysis
fjrossello/deeplearning4j
Deep Learning for Java, Scala & Clojure on Hadoop & Spark With GPUs - From Skymind
fjrossello/fastq-multx
Demultiplexes a fastq.
fjrossello/gallery
Gallery of ggplot2 extensions
fjrossello/ggfortify
Define fortify and autoplot functions to allow ggplot2 to handle some popular R packages.
fjrossello/orolab
fjrossello/Ratnayake_et_al_2020_SC
Code describing the analysis of the single cell experiment included in Ratnayake et al 2020.
fjrossello/rstudio-addins
List of useful RStudio addins made by useRs
fjrossello/RUN-WGCNA
Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)
fjrossello/WZHIVHBV
Code used to analyse SC experiments included in Zhao et al