flapperz/artery-seg

Guided Artery Segmentation on 3D Slicer

Prereq

• Slicer 4.11
• Extension
  • https://github.com/lassoan/SlicerSegmentEditorExtraEffects
  • https://github.com/vmtk/SlicerExtension-VMTK
  • https://github.com/Slicer/SlicerJupyter

Setup

1. git clone git@github.com:flapperz/artery-seg.git

2. Download files from Chula OneDrive and put in ./data

3. Setup SlicerJupyter

    jupyter-kernelspec install "/Applications/Slicer4.app/Contents/Extensions-29738/SlicerJupyter/share/Slicer-4.11/qt-loadable-modules/JupyterKernel/Slicer-4.11" --replace --user