flass
Currently post-doctoral fellow at the Wellcome Sanger Institute and honorary researcher at Imperial College London, Dept. of Infectious Disease Epidemiology
Wellcome Sanger Institute @sangerUnited Kingdom
Pinned Repositories
agrogenom
Python modules and scripts for the construction of Agrogenom database
bioinfo-training-material
some material for bioinfromatics training
cpAAI_Rhizobiaceae
pipeline and reference protein sequence data for generating core-proteome alignment of Rhizobiaceae genomes
FwdTreeSim
Python module for simulation of forward evolution of a prokaryotic(-like) pangenome
genomescans
R module and script for the analysis of aligned biological sequences, mainly to perform genome-wide scan for the detection of hotspots of diversity, LD, etc.
microbiomes
suite of scripts and modules for parsing output from metagenomic classification softwares, including Krona graphs
pantagruel
a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome
script_utils
miscellaneous bioinformatics scripts
tree2
Python modules for manipulating rooted phylogenetic trees
yemenpaper
Supporting data and scripts for paper on the Yemen cholera outbreak in 2018-2019
flass's Repositories
flass/pantagruel
a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome
flass/genomescans
R module and script for the analysis of aligned biological sequences, mainly to perform genome-wide scan for the detection of hotspots of diversity, LD, etc.
flass/tree2
Python modules for manipulating rooted phylogenetic trees
flass/FwdTreeSim
Python module for simulation of forward evolution of a prokaryotic(-like) pangenome
flass/agrogenom
Python modules and scripts for the construction of Agrogenom database
flass/bioinfo-training-material
some material for bioinfromatics training
flass/cpAAI_Rhizobiaceae
pipeline and reference protein sequence data for generating core-proteome alignment of Rhizobiaceae genomes
flass/microbiomes
suite of scripts and modules for parsing output from metagenomic classification softwares, including Krona graphs
flass/script_utils
miscellaneous bioinformatics scripts
flass/yemenpaper
Supporting data and scripts for paper on the Yemen cholera outbreak in 2018-2019