florekem

florekem's Stars

• tiroshlab/lab-book

  Help & guidelines for members of the Tirosh lab

  Language:TeX22

• TheHumphreysLab/plot1cell

  Language:R9518

• RausellLab/CelliD

  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.

  Language:R8619

• ccruizm/GBmap

  Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolution) and how to produce the figures.

  Language:Jupyter Notebook4910

• parveendabas/GBMatlas

  Language:R179

• heilandd/GBNeural

  1

• Waelchli-lab/Single-cell-atlas-of-the-human-brain-vasculature-accross-development-adulthood-and-disease

  Molecular atlas of the human brain vasculature accross development, adulthood and disease at the single-cell level

  113

• therneau/survival

  Survival package for R

  Language:R389105

• crazyhottommy/TCR-BCR-seq-analysis

  T/B cell receptor sequencing analysis notes

  20630

• slowkow/awesome-vdj

  📚 Tools and databases for analyzing HLA and VDJ genes.

  20425

• ncborcherding/Trex

  Using TCR and expression for sequence embedding

  Language:R471

• ImranR98/Obtainium

  Get Android app updates straight from the source.

  Language:Dart7.7k172

• Docile-Alligator/Infinity-For-Reddit

  A Reddit client for Android

  Language:Java4.2k404

• advplyr/audiobookshelf-app

  Mobile application for Audiobookshelf

  Language:Vue1.2k169

• bnprks/BPCells

  Scaling Single Cell Analysis to Millions of Cells

  Language:C++15318

• tiroshlab/Spatial_Glioma

  Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper

  Language:R336

• hbctraining/scRNA-seq_online

  Language:R512178

• OmicsML/awesome-deep-learning-single-cell-papers

  67888

• seandavi/awesome-single-cell

  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  3.2k977

• saezlab/dorothea

  R package to access DoRothEA's regulons

  Language:R13227

• Kiliankleemann/BulkRNAseq-Analysis

  Various scripts to analyse bulkRNAseq data, including making significant gene list, visualizations such as heatmaps and volcano-plots and making barplots for important genes. Further analysis will include pathways.

  Language:R3

• broadinstitute/gatk

  Official code repository for GATK versions 4 and up

  Language:Java1.7k588

• zhqingit/giremi

  GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.

  Language:R4215

• jtamames/SqueezeMeta

  A complete pipeline for metagenomic analysis

  Language:C37480

• lpryszcz/REDiscover

  RNA editing discovery from NGS data.

  Language:Python72

• johkra/amdmsrtweaker-lnx

  Linux port of the AmdMsrTweaker program to adjust p-states for AMD 10h, 12h and 15h family processors

  Language:C++128

• metagenome-atlas/atlas

  ATLAS - Three commands to start analyzing your metagenome data

  Language:Python37598

• trinityrnaseq/trinityrnaseq

  Trinity RNA-Seq de novo transcriptome assembly

  Language:Perl832320

• miniflux/v2

  Minimalist and opinionated feed reader

  Language:Go6.8k716

• BC44/Cross-Seed-AutoDL

  Scans files and finds cross-seedable torrents via Jackett

  Language:Python13719