Lightweight nucleotide sequence clustering and searching.
FastANI in the system PATH. FastANI for Windows is available under Releases.
blini -i input.fasta -o output.json [optional flags]
blini -i query.fasta -r reference.fasta -o output.json [optional flags]
Blini creates two output files: one by fasta name and one by number, which is the 0-based index of the sequence in the input file.
blini -h
- Blini supports nucleotide sequences only. Amino-acids are not supported.
- Blini runs on a single file with sequences, where each sequence is a separate species. Support for multiple files and multiple sequences per species will be added in the future.