Pinned Repositories
bids-fmriprep
This repository is archived. Please visit the new repository for updated versions of this gear (URL below).
c-pac
Configurable Pipeline for the Analysis of Connectomes (C-PAC)
freesurfer-recon-all
Gear that runs FreeSurfer v7.2.0 Release (July 19, 2021)
fsl-topup
Flywheel Gear to execute TopUp from FSL
fwgear-wsi-to-dicom-converter
Flywheel Gear implementation of GCP's conversion tool for converting whole slide images to DICOM
matlab-mcr
Matlab Compiler Runtime
mri-deface
This gear uses the mri_deface tool from Free Surfer to deface an MRI image.
openslide-to-png
ROI2nix
Converts ROIs created in the Flywheel OHIF viewer to nifti files.
SlicerFlywheelConnect
A 3D Slicer Extension to view data from the flywheel heirarchy
flywheel-apps's Repositories
flywheel-apps/matlab-mcr
Matlab Compiler Runtime
flywheel-apps/freesurfer-recon-all
Gear that runs FreeSurfer v7.2.0 Release (July 19, 2021)
flywheel-apps/fsl-topup
Flywheel Gear to execute TopUp from FSL
flywheel-apps/openslide-to-png
flywheel-apps/bids-fmriprep
This repository is archived. Please visit the new repository for updated versions of this gear (URL below).
flywheel-apps/fwgear-wsi-to-dicom-converter
Flywheel Gear implementation of GCP's conversion tool for converting whole slide images to DICOM
flywheel-apps/bruker2nifti
Bruker to NIfTI converter
flywheel-apps/dicom-mr-classifier
flywheel-apps/fsl-fslreorient2std
flywheel-apps/mriqc
No-reference image quality metrics for quality assessment of MRI
flywheel-apps/ROI_export
Exports ROIs as csv
flywheel-apps/afni_base
a base docker image for afni
flywheel-apps/afni_preproc_meica
this gear runs a full afni preprocessing pipeline as well as multi echo ICA
flywheel-apps/bids-freesurfer
Gear that runs freesurfer on BIDS-curated data
flywheel-apps/bids-hcp
flywheel-apps/bids-qsiprep
flywheel-apps/debug-generatefile
Generates output file of a specific size
flywheel-apps/extract-cmrr-physio
Extract physiological log files from encoded "_PHYSIO" DICOM file generated by CMRR MB sequences (>=R015, >=VD13A)
flywheel-apps/flywheel-tutorials
Just a mirror of
flywheel-apps/fsl-anat
A Flywheel gear for running FSL's Processing Script: fsl_anat
flywheel-apps/fsl-base
Build contexts for base images containing various FSL versions
flywheel-apps/fsl-feat
FEAT is a software tool for high quality model-based FMRI data analysis
flywheel-apps/fsl-siena-sienax
flywheel-apps/fsl-SuperBET2
Modified Brain Extraction Tool 2 (BET2) from FMRIB Software Library (FSL) v5.0 called SuperBET2 deletes non-brain tissue from an image of the whole head. It can also estimate the inner and outer skull surfaces, and outer scalp surface, if you have good quality T1.
flywheel-apps/gear_sdk_audit
Flywheel gear audit on a set of instances, or the Flywheel exchange
flywheel-apps/nobrainer-gear
This gear wraps nobrainer for prediction on 3D imaging
flywheel-apps/nyu_rotator_cuff_gear_suite
A suite of gears providing management for the NYU/Siemens Rotator Cuff Tear Project
flywheel-apps/os_py_ver_audit
Flywheel gear audit on a set of instances, or the Flywheel exchange
flywheel-apps/philips_to_ismrmrd
Philips to ISMRMRD converter
flywheel-apps/siemens_to_ismrmrd
Siemens to ISMRMRD converter