automates the process of downloading GSE files from public repository GEO
cd <working directory>
git clone https://github.com/laratse/Download_GSE_Files.git
- change permissions of
downloadFiles
anddownloadGseFiles.sh
chmod +x downloadFiles Tools/downloadGseFiles.sh
- move
Tools
anddownloadFiles
to working directory
- Create your own directory to store the downloaded files. The directory name must be in the format of "xx..x_GSEnn..n" (no whitespace characters allowed, GSE id must be placed at the end of the string), eg. xyz_XYZ_GSE12345. When a corresponding directory is not provided, a default directory with the name DIR_GSEn...nn will be used instead
- create in.txt to enter the ID, one ID per line
- run the program by
./downloadFiles