Correct handling of status in add_status_tree()
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LisaHuelsmann commented
It seems the function add_status_tree() is not properly handling status codes other than A or D. More specifically, all stems (and thus also the corresponding trees) with a status of either G = gone, M = missing or P = prior are considered as alive.
I was not able to control for this with the arguments status_a and status_d.
# modified code from the example
stem <- tribble(
~CensusID, ~treeID, ~stemID, ~status,
1, 1, 1, "P",
1, 1, 2, "P",
1, 2, 3, "A",
1, 2, 4, "D",
1, 3, 5, "D",
1, 3, 6, "D",
2, 1, 1, "A",
2, 1, 2, "G",
2, 2, 3, "D",
2, 2, 4, "G",
2, 3, 5, "M",
2, 3, 6, "M"
)
add_status_tree(stem)