foriin
Department of Molecular Biosciences, The Wenner-Gren Institute, Stockholm UniversityStockholm, Sweden
Pinned Repositories
Brains.DamID
Scripts for processing DamID-seq and Microarray data in drosophila brains and Kc167 cells
DAM
DamID analysis of raw sequence data
DamID-seq
A set of scripts used to analyze DamID-seq experiments in the Laboratory of Analysis of Gene Regulation of IMG RAS, Moscow
DamID.bins
Scripts for DamID-seq processing
damid.to.genes
Script to assign results from DamID experiment to genes from flybase
damidseq_pipeline
An automated pipeline for processing DamID sequencing datasets
Datasets
Includes sample datasets for machine learning
deepTools
Tools to process and analyze deep sequencing data.
dm3
R package containing basic functions and data related to dm3 r5.57 release of Drosophila melanogaster genome
PaintSHOP_DNA_QC
R script for assessing the DNA probes made in PaintSHOP (for Drosophila melanogaster)
foriin's Repositories
foriin/DamID-seq
A set of scripts used to analyze DamID-seq experiments in the Laboratory of Analysis of Gene Regulation of IMG RAS, Moscow
foriin/Brains.DamID
Scripts for processing DamID-seq and Microarray data in drosophila brains and Kc167 cells
foriin/DAM
DamID analysis of raw sequence data
foriin/DamID.bins
Scripts for DamID-seq processing
foriin/damid.to.genes
Script to assign results from DamID experiment to genes from flybase
foriin/PaintSHOP_DNA_QC
R script for assessing the DNA probes made in PaintSHOP (for Drosophila melanogaster)
foriin/damidseq_pipeline
An automated pipeline for processing DamID sequencing datasets
foriin/Datasets
Includes sample datasets for machine learning
foriin/deepTools
Tools to process and analyze deep sequencing data.
foriin/dm3
R package containing basic functions and data related to dm3 r5.57 release of Drosophila melanogaster genome
foriin/Elys
work with nucleoporins and lamins in drosophila testes
foriin/Elys_embryos_2022
Collection of scripts used for the research of Elys protein in Drosophila melanogaster
foriin/ImageJ-nuclear-profiles
foriin/Lam_Sperm
Collection of R scripts used to analyze bioinformatic data for 'Changes in genome architecture at two consecutive stages of Drosophila spermatogenesis' by Artem A. Ilyin
foriin/Piccolo
A little script that looks for piRNA clusters based on small RNA library coverage
foriin/piPipes
piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School
foriin/R-counts
script who count statistic by data from DamID script
foriin/RDML.qPCR
obtaining data from BioRad qPCR machine
foriin/stepic_webdev
foriin/SuRoQ
A pipeline for quick and dirty QC of your small RNA-seq libraries focused on piRNA.
foriin/TE-Aid
foriin/te_motif
Shiny app for screening for core promoter occurrences close to expressed transposons TSSs.
foriin/TE_profiles
A Shiny app for plotting bedgraphs on short sequences.
foriin/TE_venns
A Shiny app showing active TE insertions shared between 3 Drosophila tissues (1 tissue was treated).
foriin/test_pdf
Test pdfs for working with LLMs