Pinned Repositories
amygda
Automated Mycobacterial Growth Detection Algorithm, funded by NIHR Oxford Biomedical Research Centre
cryptic-ecoffs
Data and code to reproduce the figures and tables in the CRyPTIC ECOFF/ECV paper
predict-rifampicin-resistance
Protein-Mutation-Viewer
pyniverse
generic Python package for parsing, analysing and plotting Zooniverse data classification export files
sbmlcore
Collection of core classes and functions for structure-based machine learning to predict antimicrobial resistance
tb-rbfe-setup
Files and scripts to rerun A90V DNAG and S450L RBFE calculations
tb-rnap-compensation
Investigation of the role of compensatory mutations in rifamycin resistance in M. tuberculosis
validate-myco-amr
Data and code to validate the second version of the WHO catalogue of resistance-associated variants in tuberculosis
who_catalogue_conversion
Convert mutations from the WHO TB catalogue to GARC
Predicting AMR de novo's Repositories
fowler-lab/pyniverse
generic Python package for parsing, analysing and plotting Zooniverse data classification export files
fowler-lab/sbmlcore
Collection of core classes and functions for structure-based machine learning to predict antimicrobial resistance
fowler-lab/who_catalogue_conversion
Convert mutations from the WHO TB catalogue to GARC
fowler-lab/tb-rnap-compensation
Investigation of the role of compensatory mutations in rifamycin resistance in M. tuberculosis
fowler-lab/amygda
Automated Mycobacterial Growth Detection Algorithm, funded by NIHR Oxford Biomedical Research Centre
fowler-lab/cryptic-ecoffs
Data and code to reproduce the figures and tables in the CRyPTIC ECOFF/ECV paper
fowler-lab/Protein-Mutation-Viewer
fowler-lab/bashthebug
fowler-lab/bashthebug-consensus-dataset
Dataset of classifications made by BashTheBug volunteers used to decide how to form a consensus
fowler-lab/jupyter-notebook-example
A prototype jupyter notebook
fowler-lab/molstar-mutation
A comprehensive macromolecular library adapted for visualisation of protein mutations
fowler-lab/predict-pyrazinamide-resistance
fowler-lab/predict-rifampicin-resistance
fowler-lab/sbmlcore-tutorials
fowler-lab/seqtreat
Python code to validate the spreadsheets containing M. tuberculosis AST data donated to the project. Likely to expand in future.
fowler-lab/tb-bdq-cat
fowler-lab/tb-rbfe-setup
Files and scripts to rerun A90V DNAG and S450L RBFE calculations
fowler-lab/validate-myco-amr
Data and code to validate the second version of the WHO catalogue of resistance-associated variants in tuberculosis
fowler-lab/Inh_resistance
fowler-lab/intreg
A Python implementation of interval regression
fowler-lab/tb-lineage-mutations
Reference list of lineage-defining mutations as derived from SNP-IT