/macroMSI-processing

Primary LanguageMATLABOtherNOASSERTION

macroMSI processing

Macropathology image processing at Tokyo Institute of Technology

Matlab Infromation

Functions

  • Data I/O
  • Read MSI, spectra
  • Preprocessing
  • Feature extraction
  • Graphs and plots
  • Image creation
  • Visual tool

Matlab version

above 2019a

Required Packages from Mathworks

  • adaptation_model/
  • catstruct/
  • delimread/
  • DiscreteFrechetDist/
  • export_fig/
  • FastICA_25/
  • HSVBWColormap/
  • imoverlay/
  • LBP/
  • LDA/
  • region_growing/
  • regionGrowing/
  • shadedErrorBar/
  • spectral_color/
  • Tutorial_HSI2RGB/
  • xlswrite/

Python

Functions

  • Classification
  • Dimension Reduction
  • Validation
  • Testing

Python version

v.3.7.

Required Packages

  • numpy
  • sklearn
  • matplot-lib
  • scikit-learn
  • scipy