/CountMatrixDownsizer

Rarefies OTUs or genes raw abundance profiles to even sequencing depth across samples.

Primary LanguageC++

count-matrix-downsizer

This tool rarefies OTUs or genes raw abundance profiles to even sequencing depth across samples.

Requirements

Usage

./count-matrix-downsizer -h

Input count matrix example

gene_id sample_1 sample_2 sample 3
gene_1 10 0 3
gene_2 0 21 8
gene_3 12 9 3
gene_4 10 12 11