Pinned Repositories
ADAM
Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens
BAGELR
R implementation of the BAGEL method to call for gene essentiality significance
CELLector
CELLector_App
R shiny App performing Genomics Guided Selection of Cancer In Vitro Models
CRISPRcleanR
Unsupervised correction of gene independent cell responses to CRISPR-cas9
FI.GDSC.ANOVA
Scripts and R functions used to perform Analysis of Variance on the GDSC1000 data, thus to identify statistical interactions between genomic features and drug response, and produce formatted results and figures
FI.GDSC.ANOVA.MULTIFACTORIAL
R scripts and functions implementing a systematic Analysis of Variance on the GDSC1000 data, to identify statistical significant pharmacogenomic interaction and produce result packages.
GeX_Meth_Discretiser
Functions and scripts to discretise continuous signals
iNRG_cMap
Iterative Network Guided Connectivity Mapping
SLAPenrich
Sample Level Analysis of Pathway Enrichments
francescojm's Repositories
francescojm/CRISPRcleanR
Unsupervised correction of gene independent cell responses to CRISPR-cas9
francescojm/ADAM
Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens
francescojm/CELLector
francescojm/BAGELR
R implementation of the BAGEL method to call for gene essentiality significance
francescojm/CELLector_App
R shiny App performing Genomics Guided Selection of Cancer In Vitro Models
francescojm/FI.GDSC.ANOVA
Scripts and R functions used to perform Analysis of Variance on the GDSC1000 data, thus to identify statistical interactions between genomic features and drug response, and produce formatted results and figures
francescojm/FI.GDSC.ANOVA.MULTIFACTORIAL
R scripts and functions implementing a systematic Analysis of Variance on the GDSC1000 data, to identify statistical significant pharmacogenomic interaction and produce result packages.
francescojm/GeX_Meth_Discretiser
Functions and scripts to discretise continuous signals
francescojm/iNRG_cMap
Iterative Network Guided Connectivity Mapping
francescojm/SLAPenrich
Sample Level Analysis of Pathway Enrichments
francescojm/MutExMatSorting
Mutual Exclusivity Sorting of Binary Matrices
francescojm/OT-CPI-Pipelines
R scripts and function for analysis of the data from Wang et al. Science 2015