franciscozorrilla
PhD Student in the Patil Lab. Interested in metagenomics, metabolic modeling of microbial communities, and machine learning
MRC Toxicology, University of CambridgeCambridge, UK
Pinned Repositories
mi_cheese
Repository with code & data for the publication Microbial interactions shape cheese flavour formation
Chalmers-iGEM2018
COM-dFBA is a MATLAB based COMmunity Dynamic Flux Balance Analysis framework developed by the Chalmers iGEM 2018 team. For this work, we were nominated for best modeling at the Giant Jamboree.
EMBOMicroCom
Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022
EMBOMicroCom2
Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2024
metaGEM
:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
metaGEM_paper
Repo housing :gem: metaGEM paper results
SymbNET
Teaching materials for SymbNET course: from MAGs to GEMs
systems-biology-fba-practical
University of Cambridge Part III Systems Biology course, practical exercises for learning flux balance analysis
unseenbio_metaGEM
metaGEM applied to unseenbio WGS sequencing samples
hanpo-GEM
Draft genome-scale model of Hansenula polymorpha (Ogataea polymorpha; Pichia angusta)
franciscozorrilla's Repositories
franciscozorrilla/metaGEM
:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
franciscozorrilla/SymbNET
Teaching materials for SymbNET course: from MAGs to GEMs
franciscozorrilla/EMBOMicroCom
Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022
franciscozorrilla/metaGEM_paper
Repo housing :gem: metaGEM paper results
franciscozorrilla/unseenbio_metaGEM
metaGEM applied to unseenbio WGS sequencing samples
franciscozorrilla/systems-biology-fba-practical
University of Cambridge Part III Systems Biology course, practical exercises for learning flux balance analysis
franciscozorrilla/Chalmers-iGEM2018
COM-dFBA is a MATLAB based COMmunity Dynamic Flux Balance Analysis framework developed by the Chalmers iGEM 2018 team. For this work, we were nominated for best modeling at the Giant Jamboree.
franciscozorrilla/EMBOMicroCom2
Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2024
franciscozorrilla/lichens
Metabolic modeling of lichen metagenomes
franciscozorrilla/bioconda-recipes
Conda recipes for the bioconda channel.
franciscozorrilla/franciscozorrilla
franciscozorrilla/franciscozorrilla.github.io
franciscozorrilla/kefir_paper
Supplementary Material for Blasche et al
franciscozorrilla/melanie_screen_GEMs
This repo contains inputs, outputs, and step-by-step details regarding how genome scale metabolic models were reconstructed for strains used in Melanie's screen.
franciscozorrilla/S.coelicolor
franciscozorrilla/soil_auxo