francoiskroll
Postdoctoral fellow in Del Bene lab @ Institut de la Vision, Sorbonne Université, Paris
Sorbonne UniversitéParis, France
Pinned Repositories
ahoCorasick
Python implementation of the Aho-Corasick algorithm.
bulkvis
DeepBrainStimulation_modelling
Computational modelling project looking at how a neuron from the subthalamic nucleus behaves under non-conventional deep brain stimulation waveforms.
DNAmAge_vs_Cancer
Functional genomics project in R looking at relationships between DNA methylation age in the head and neck squamous cell carcinoma and clinical annotations, patient survival and gene expression.
exonChaining
Dynamic programming algorithm solving the Exon Chaining Problem in gene prediction.
FramebyFrame
FramebyFrame R package
micropeptides_fingerprints
Collaboration with Valerie Tornini at Giraldez lab, Yale University
prnp_nanopore
ZFAD
Kroll et al., 2024. Behavioural pharmacology predicts [...]. eLife.
ZOLTAR
Shiny app for predictive pharmacology
francoiskroll's Repositories
francoiskroll/DNAmAge_vs_Cancer
Functional genomics project in R looking at relationships between DNA methylation age in the head and neck squamous cell carcinoma and clinical annotations, patient survival and gene expression.
francoiskroll/FramebyFrame
FramebyFrame R package
francoiskroll/ahoCorasick
Python implementation of the Aho-Corasick algorithm.
francoiskroll/DeepBrainStimulation_modelling
Computational modelling project looking at how a neuron from the subthalamic nucleus behaves under non-conventional deep brain stimulation waveforms.
francoiskroll/micropeptides_fingerprints
Collaboration with Valerie Tornini at Giraldez lab, Yale University
francoiskroll/bulkvis
francoiskroll/exonChaining
Dynamic programming algorithm solving the Exon Chaining Problem in gene prediction.
francoiskroll/f0knockout
Data and scripts of preprint Kroll et al., 2020 – F0 knockout method
francoiskroll/frameshiftShiny
Shiny app demonstrating the knockout by frameshift model
francoiskroll/prnp_nanopore
francoiskroll/ZFAD
Kroll et al., 2024. Behavioural pharmacology predicts [...]. eLife.
francoiskroll/ZOLTAR
Shiny app for predictive pharmacology
francoiskroll/gitsocial
Add social media icons to your GitHub README files.
francoiskroll/ketoCompounds
Public storage of my 2016 Master's thesis. Research conducted in Eric Verdin's lab at the Gladstone Institute in San Francisco, under John Newman's supervision.
francoiskroll/misc
Miscellaneous files
francoiskroll/miseqUtils
francoiskroll/multiDigest
Exhaustive search algorithm solving the Multi-Digest Problem.
francoiskroll/nanopolish
Signal-level algorithms for MinION data
francoiskroll/nanoporereads_LengthvsTime
Command line/R script to create a Length vs Time scatterplot of the reads in a fastq file.
francoiskroll/PhDrotations
To store publically reports of 3-month projects I did during my first year of PhD in 2017–2018 @University College London
francoiskroll/reciprocal_BLAST
Scripts for BLAST analysis of circadian clock genes
francoiskroll/smallDNAExercises
A series of small Python exercises on DNA sequences.
francoiskroll/Structure_Paper
francoiskroll/zebrafish_orthologs
Semi-automated method to find orthologs of human genes in zebrafish by reciprocal best hits.