Pinned Repositories
assessing_mol_prediction_confidence
https://arxiv.org/abs/2102.11439
bio_embeddings
Get protein embeddings from protein sequences
biotite
A comprehensive library for computational molecular biology
CPP-Primer-Plus-6
Programming Exercises of c++ primer plus sixth edition.
CrossSpeciesWorkflow
CWL workflow that facilitate performing a series of structural and phenotype related third party prediction methods starting from either a protein FASTA file or a list of Uniprot IDs. Integrated prediction methods refer to secondary structure, solvent accessibility, disordered regions, PTS modifications (phosphorylation, glycosylation, lipid modification, sumoylation, etc).
cs229-2018-autumn
All notes and materials for the CS229: Machine Learning course by Stanford University
Deep-Unsupervised-Learning-Note
CS294-158 Deep Unsupervised Learning Note
deepul
Dora
Tools for exploratory data analysis in Python
dssp
Application to assign secondary structure to proteins
frankji's Repositories
frankji/assessing_mol_prediction_confidence
https://arxiv.org/abs/2102.11439
frankji/bio_embeddings
Get protein embeddings from protein sequences
frankji/biotite
A comprehensive library for computational molecular biology
frankji/cs229-2018-autumn
All notes and materials for the CS229: Machine Learning course by Stanford University
frankji/Deep-Unsupervised-Learning-Note
CS294-158 Deep Unsupervised Learning Note
frankji/Dora
Tools for exploratory data analysis in Python
frankji/dssp
Application to assign secondary structure to proteins
frankji/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
frankji/fpocket
fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and extract pocket descriptors on a large scale level. fpocket is distributed as free open source software. If you are interested in integrating fpocket in an industrial setting and require official support, please contact Discngine (www.discngine.com).
frankji/frankji.github.io
frankji/freesasa
C-library for calculating Solvent Accessible Surface Areas
frankji/getcontacts
Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation
frankji/Graphormer
This is the official implementation for "Do Transformers Really Perform Bad for Graph Representation?".
frankji/libcifpp
Library containing code to manipulate mmCIF and PDB files
frankji/masif
MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
frankji/MoneyPrinter
Automate Creation of YouTube Shorts using MoviePy.
frankji/MoneyPrinterV2
Automate the process of making money online.
frankji/Neural_Topic_Models
Implementation of topic models based on neural network approaches.
frankji/performer-pytorch
An implementation of Performer, a linear attention-based transformer, in Pytorch
frankji/PSSMGen
Generates consistent PSSM and/or PDB files for protein-protein complexes
frankji/PyEMMA
🚂 Python API for Emma's Markov Model Algorithms 🚂
frankji/pyemma-workshop
frankji/PyTorch-VAE
A Collection of Variational Autoencoders (VAE) in PyTorch.
frankji/ReduNet
frankji/Reinvent
frankji/SD-CN-Animation
This script allows to automate video stylization task using StableDiffusion and ControlNet.
frankji/sd-webui-controlnet
WebUI extension for ControlNet
frankji/sd-webui-roop
roop extension for StableDiffusion web-ui
frankji/sd-webui-text2video
Auto1111 extension implementing text2video diffusion models (like ModelScope or VideoCrafter) using only Auto1111 webui dependencies
frankji/tape
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.