/Meta-analysis-TCGA

A systematic meta-analysis of differentially expressed genes in melanoma and glioblastoma

Primary LanguagePythonMIT LicenseMIT

Meta-analysis-TCGA

A systematic meta-analysis of differentially expressed genes in melanoma and glioblastoma. This is initially for University of Cincinnati Fall 2020 semester Meta Analysis final project.

Dependencies

  • Python3
  • R ( metafor package )
  • numpy
  • pandas
  • seaborn

How to use the workflow

Check the document (My submitted final project pdf)

/doc/meta-analysis-project.pdf

Check the main code

python3 meta.py

Workflow

melanoma workflow

Contact

Guangyuan(Frank) Li

li2g2@mail.uc.edu

Phd Student, Biomedical Informatic

Cincinnati Children's Hospital Medical Center

Univeristy of Cincinnati