freepluslq

freepluslq's Stars

• lmcinnes/umap

  Uniform Manifold Approximation and Projection

  Language:Python7.5k127797809

• seandavi/awesome-single-cell

  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  3.2k24823989

• satijalab/seurat

  R toolkit for single cell genomics

  Language:R2.3k748k919

• scverse/scanpy

  Single-cell analysis in Python. Scales to >1M cells.

  Language:Python1.9k501.8k604

• pachterlab/kallisto

  Near-optimal RNA-Seq quantification

  Language:C65848372172

• dpeerlab/Palantir

  Single cell trajectory detection

  Language:Jupyter Notebook2261112452

• bmvdgeijn/WASP

  WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery

  Language:Python1031110051

• cozygene/bisque

  An R toolkit for estimation of cell composition from bulk expression data

  Language:R6853820

• AllonKleinLab/SPRING_dev

  Language:JavaScript66102833

• sandhya212/BISCUIT_SingleCell_IMM_ICML_2016

  R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.

  Language:R65123133

• QuKunLab/ATAC-pipe

  Analysis pipeline for ATAC-seq Data

  Language:Python603627

• QuKunLab/APEC

  Single cell epigenomic clustering based on accessibility pattern

  Language:Python23319

• freepluslq/ATAC-pipe

  Analysis pipeline for ATAC-seq Data

  Language:Python1100