bioinformatics research
Pipeline to Call varinats: seq 1 19 | parallel -j 12 --eta sh $EXOMPPLN/ExmAln.1a.Align_Fastq_to_Bam_with_BWAmem.sh -i fastq_head2.txt -r $EXOMPPLN/WES_Pipeline_References.b37.sh -a {}
To do: finish pipeline part add if process multi fastq line part
finish qc part --- ash's hist plots --- doc part --- my de novo counts
finish analysis part --- burden --- add mapp and reapmask