circular DNA in output
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charliechen912ilovbash commented
Hi,
I have a simple question.
Will NanomonSV output structural variant in circular DNA like mitochondria ? (if there is a somatic SV)
friend1ws commented
Sorry for the very late response.
If the alignment was precise, then nanomonsv would identify SVs in circular DNA.
However, I have never tried it myself.
As for mitochondria, there are polymorphisms and I think it may be quite difficult.